Enterobacter kobei DSM 13645: BFV64_08480
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Entry
BFV64_08480 CDS
T04686
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
ekb
Enterobacter kobei DSM 13645
Pathway
ekb03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ekb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BFV64_08480
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ekb03019
]
BFV64_08480
03009 Ribosome biogenesis [BR:
ekb03009
]
BFV64_08480
Enzymes [BR:
ekb01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
BFV64_08480
Messenger RNA biogenesis [BR:
ekb03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
BFV64_08480
Ribosome biogenesis [BR:
ekb03009
]
Prokaryotic type
rRNA processing factors
BFV64_08480
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
PNPase_C
S1
Motif
Other DBs
NCBI-ProteinID:
AOP86388
LinkDB
All DBs
Position
complement(1770028..1773144)
Genome browser
AA seq
1038 aa
AA seq
DB search
MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY
GAERHGFLPLKEIAREYFPANYNAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFI
SLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALASLELPDGMGLIVRTAGVGKSAEAL
QWDLSFRLKHWEAIQKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELA
RQHIAALGRPDFTSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDTTEALT
AIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVE
NRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLS
LSILRLIEEEALKENTKEVHAIVPVPIASYLLNEKRAAVSAIEARQGGVRCIIVPNDQME
TPHYHVLRVRKGEETSTLSYLLPKLHEEEMALPSDEEPAERKLPEQPALATFIMPEAPPE
AALEKPVTKPVVQKPEAAAPKAQPAQQGLLSRFFGALKKMFAGEEVQPEQPKEEPKAAKP
ERQQDRRKRQNNRRDRNDRNDRNDRNDRRDNRSDNSEGREQREDNRRNRREKQQQNVEDR
EIRQQAGDESEKGKQRDDQQPRRERSRRRNDEKRQAQQDVKNLNREEPVEQQDSEQEERT
QVMPRRKQRQLTQKVRIGAPQAEETAAVAAEVPEAATGTQIAKVDLPAVVENHVEQDENG
ENRDNAGMPRRSRRSPRHLRVSGQRRRRYRDERYPTQSPMPLTVACASPEMASGKVWIRY
PVARPEQAVEEQAVTEEVIAHVAAVEEVVTEAATVVKPQAVETAEPQAVEVETTHPEVIA
APVEAAPQLIAEEDVVVAKDVAEEAEPVAAVEETAEAIVETTAEDVVQDVEIQVEPVVED
VKAPEVEPEPVKIVAAPAPVHVATAPMTRAPAPDYVPEAPRHSDWVRPEFNFEGKGAAGG
HSATHKATAPATRPQSVE
NT seq
3117 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagaatgttaatcaacgcaactcagcaagaagagttgcgtgtcgcccttgtggat
gggcagcgcctgtacgatctggatatcgaaagtcctggacacgaacagaaaaaagcgaac
atttacaaaggtaaaatcacccgcattgaacccagccttgaagctgcatttgttgattac
ggtgctgagcgtcatggtttcctccctctgaaagaaatcgcccgcgaatatttccctgcc
aactacaacgcccatggccgcccaaacatcaaagatgttctgcgtgaaggtcaggaagtt
atcgtccagattgataaagaagagcgtggcaacaaaggtgccgcactgacgacctttatt
agcctggcagggagctatctggtgctgatgccaaacaacccgcgtgcgggtggcatctct
cgccgtatcgaaggtgatgaccgtaccgagctgaaagaagcgctggcaagccttgagctg
ccggatggcatgggacttatcgtgcgtaccgcaggcgtgggcaaatctgccgaagcgctg
cagtgggacttaagcttccgtctgaagcactgggaagctatccagaaagctgcagaaagc
cgccctgctccgttcctgatccaccaggaaagcaacgttatcgtgcgtgccttccgtgac
tacctgcgtcaggacatcggtgaaatcctgatcgacaacccaaaagtgcttgaactggct
cgccagcacatcgccgcactgggtcgtccggatttcaccagcaaaatcaaactgtacacc
ggcgaaatcccgctgttcagccactatcagattgaatcccagattgagtccgccttccag
cgtgaagtgcgcctgccctctggcggttctatcgtaatcgatacaacagaagcgctgacc
gcaatcgacatcaactccgcacgtgccacacgcggcggtgacatcgaagagaccgccttc
aacaccaaccttgaagccgcagatgaaatcgcccgccagctccgcctgcgcgacctgggt
ggtctgattgttatcgacttcatcgacatgacgccggtccgccaccagcgtgcggtcgag
aaccgcctgcgtgaagcggtacgtcaggatcgtgcacgtatccagattagccatatctcg
cgcttcggcctgctggagatgtcccgccagcgtctgagcccgtcgctgggtgaatccagc
catcacgtttgtccgcgctgctccggcaccggtaccgtacgtgataacgaatctctctcc
ctctctatcctgcgtctgattgaagaagaagcgctgaaagagaacaccaaagaggttcac
gccattgtccctgtgccaattgcctcctacctgctgaacgaaaaacgtgctgcagtgagt
gctatcgaagcacgtcagggcggcgttcgctgcatcatcgtgccaaacgaccagatggaa
accccgcactaccatgtgctgcgtgtccgtaaaggtgaagagaccagcacgctcagctat
ctgttgccgaaactgcacgaagaagagatggcgctgccttccgatgaggaacccgccgag
cgcaaactgccagagcagcctgcgttagccaccttcatcatgccagaagcaccgccagaa
gcggccctggaaaaaccggtcactaaacctgtcgtgcagaaaccagaagccgcggcaccg
aaagcccagccggcgcaacagggtctgctgagccgcttcttcggcgcgctgaaaaagatg
tttgcgggtgaagaagtccagccagagcagccgaaagaagaaccaaaagcggctaaacct
gagcgtcagcaggatcgtcgtaaacgtcagaacaaccgccgcgatcgtaatgaccgcaac
gaccgtaacgatcgtaacgaccgtcgtgacaaccgttcagacaacagcgaaggccgtgag
caacgcgaagacaaccgtcgcaaccgtcgcgagaaacaacagcagaacgttgaagatcgt
gaaattcgccagcaggcgggcgatgagtctgagaagggcaaacagcgtgacgaccagcag
ccacgtcgcgaacgtagccgtcgtcgtaacgacgagaaacgtcaggcccagcaggacgtc
aaaaacctgaaccgcgaagagcctgtagagcagcaggacagcgagcaggaagaacgtact
caggttatgccacgtcgtaagcagcgccagctgacgcagaaagtgcgcattggtgctcct
caggcagaagaaaccgcagctgtagcggctgaagtaccggaagccgcaacgggtacgcag
attgcaaaagttgatctgccagccgttgtggaaaatcacgttgagcaggatgagaatggg
gaaaaccgtgacaacgcaggcatgccgcgccgttcacgtcgttctccgcgtcatctgcgc
gtcagcggccagcgtcgtcgtcgttaccgtgacgagcgttacccgactcagtctccaatg
ccgttgaccgtcgcgtgcgcgtcacctgaaatggcatccggcaaagtctggatccgttac
ccggttgctcgcccggagcaggctgttgaagaacaggctgtgaccgaagaggtgattgca
catgtcgccgcggttgaagaggtcgtgactgaagccgcaaccgtggttaagcctcaggct
gttgaaacagcagaacctcaggctgtagaagtcgaaaccacgcaccctgaagtgattgcc
gcgccggttgaagccgctccacagctgattgctgaagaagatgtcgtggtcgctaaggac
gtcgctgaagaggctgaacctgtagccgcagtggaagagaccgctgaagccatcgtcgaa
accaccgctgaagacgttgttcaggacgttgagattcaggttgaaccggttgtcgaagac
gtgaaagcgcctgaagtggagccagagccggttaagattgtcgccgcgcctgcgccagtt
cacgttgcaacagcgccgatgacacgtgctccggcaccggattatgtgcctgaagcaccg
cgtcacagcgactgggttcgcccggaattcaacttcgaaggtaaaggtgcagccggtggt
cacagtgctacgcacaaggcaactgcaccagccacccgtccgcagtctgttgaataa
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