Enterobacter kobei DSM 13645: BFV64_08660
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Entry
BFV64_08660 CDS
T04686
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
ekb
Enterobacter kobei DSM 13645
Pathway
ekb03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ekb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
BFV64_08660
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ekb03400
]
BFV64_08660
Enzymes [BR:
ekb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
BFV64_08660
DNA repair and recombination proteins [BR:
ekb03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
BFV64_08660
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
MFD_D3
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
UB2H
Cas3-like_C_2
ERCC3_RAD25_C
HTH_53
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
AOP86422
UniProt:
A0AAJ6LP91
LinkDB
All DBs
Position
complement(1806472..1809918)
Genome browser
AA seq
1148 aa
AA seq
DB search
MPEHYRYSLPVKAGDQRQLGELTGAACATLVAEIAERHPGPVVLVAPDMQNALRLHDEIR
QFTDSLVFSLADWETLPYDSFSPHQEIISSRLSTLYQLPTMQRGVLIVPVNTLMQRVCPH
SYLHGHALVMKKGQRLSRDALREQLDGAGYRHVDQVMEHGEYATRGALLDLYPMGSDQPY
RLDFFDDEIDSLRVFDADTQRTLEEVESINLLPAHEFPTDKTAIELFRSQWRDKFDVKRD
AEHIYQQVSKGTLPAGIEYWQPLFFNEPLPALFSYFPANTLIVNTGDIDASASRFESETR
ARFENRGVDPMRPLLPPEALWLRTDELNAELKRWPRIQLKTDSLADKAANTNLAFRTLPD
LAVQAQQKSPLDNLRKFLESFTGPVVFSVESEGRREALGELLGRIKVAPKRIQRLSDAAG
NGRYLMIGAAEHGFIDTLNNLALICESDLLGERVARRRQDSRRTINPDTLIRNLAELHPG
QPIVHLEHGVGRYQGMTTLEAGGIKGEYLMLTYANDAKLYVPVSSLHLISRYAGGAEDNA
PLHKLGGDAWARARQKAAEKVRDVAAELLDIYAQRAAKEGFAFKHDKEQYQLFCDSFPFE
TTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVENNKQVAVLVPTTL
LAQQHFDNFRDRFANWPVRIEMLSRFRSAKEQTQILEQASEGKIDILIGTHKLLQSDVKW
KDLGLLIVDEEHRFGVRHKERIKAMRADVDILTLTATPIPRTLNMAMSGMRDLSIIATPP
ARRLAVKTFVREYDNLVVREAILREVLRGGQVYYLYNDVENIQKAADRLAELVPEARIAI
GHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLR
GRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELLG
EDQSGSMETIGFSLYMELLENAVDALKAGREPSLEDLTSQQTEVELRMPSLLPDDFIPDV
NTRLSFYKRIASAKNENELEEIKVELIDRFGLLPDAARNLLDIARLRQQAQKLGIRKLEG
NEKGGVIEFAEKNHVNPMWLIGLLQKQPQYFRLDGPTRLKFTQELADRKTRMDWVRNFMR
QLEENAVA
NT seq
3447 nt
NT seq
+upstream
nt +downstream
nt
atgcctgaacactatcgttattccttgcctgtcaaagcgggcgaccagcgccagttgggt
gaacttacgggcgcggcgtgcgccacgctggtggcagaaattgctgaacgacaccccggc
ccggtggtgcttgttgccccggatatgcaaaatgccctgcgcctgcacgacgaaatccgc
cagttcaccgatagcctggtgttcagcctggccgactgggaaacgctgccgtatgacagc
ttctctccgcatcaggagatcatctcctcgcgcctgtcgacgctctaccagttgccgacc
atgcagcgcggtgtgctgattgtgccggtgaataccctgatgcagcgcgtctgtccgcac
agctatctgcatggtcatgcgctggtgatgaaaaaaggccagcgcctgtcccgtgatgcc
ctgcgcgagcagcttgacggtgccggctatcgccatgtcgatcaggtgatggagcacggg
gaatacgcaacccgtggcgcactgcttgatctgtatcctatgggcagcgaccagccgtat
cgtctcgatttcttcgatgatgaaatcgacagcctgcgcgtgttcgacgccgacacccag
cgcacgctggaggaagtagagtccattaacttactgcccgcacatgaattcccgacggac
aaaactgccatcgaactgttccgcagccagtggcgcgataagttcgacgtgaagcgtgat
gccgagcacatctatcagcaggtcagcaaaggcacgctcccggccgggatcgaatactgg
cagccgttgttctttaacgagccgctacctgccctgttcagctacttcccggcaaatacg
ctgattgtgaacaccggcgatatcgacgccagcgccagccgtttcgaaagcgaaacccgc
gcccgcttcgaaaaccggggcgttgacccgatgcgtccgctgctgccgccggaagcgctg
tggctgcgtaccgacgaactcaatgcggagctgaagcgttggccgcggatccagctcaaa
accgattcgcttgccgataaggccgccaacaccaacctcgccttccggacgctgccggac
ctggccgtacaggcgcagcagaaatcgccgctggataatctgcgcaagttcctggagtcc
tttaccggcccggtggtgttctccgttgagagtgaaggccgccgcgaagcactcggcgag
ctgctggggcgaataaaagttgcgccgaaacgcattcagcgcctcagcgacgcggccgga
aacggccgttatctgatgattggtgccgccgaacacgggtttattgatacgctcaacaac
ctggcgctgatttgcgaaagcgatctgctgggtgagcgcgtcgcgcggcgccgtcaggac
agccgtcgaaccattaacccggacacgctgatccgtaacctggccgaactgcatccgggc
cagcccattgttcacctggaacatggcgttgggcgctatcagggaatgaccacgctggaa
gccggcggcatcaaaggtgaatacctgatgctgacctacgccaacgacgccaaactgtat
gttccggtgtcatccctgcatctgatcagccgatacgcgggtggcgcggaggataacgcc
ccgctgcacaagctgggcggcgatgcctgggctcgcgcgcgccagaaagcggcggagaaa
gtacgcgacgtggcggccgagctgctggatatctacgcccagcgcgcggccaaagagggc
ttcgcctttaagcatgataaagagcagtaccagctgttctgcgacagtttcccgtttgaa
accacgccggatcaggcccaggccatcaacgccgtattgagcgacatgtgccagccgctg
gcgatggaccgcttagtctgcggcgacgtcggcttcggcaagaccgaagtggcgatgcgc
gccgccttcctggcggttgaaaacaacaagcaggtggcggtgctggtgccgaccaccctg
ctcgcccagcagcacttcgacaacttccgcgaccgtttcgccaactggccggtgcgcatt
gagatgctgtcacgttttcgcagcgccaaagagcagacgcagatcctcgaacaggcaagc
gaaggcaaaatcgatattctgataggtacgcacaagctgctgcaaagcgacgtgaagtgg
aaagatctggggctgctgatcgtcgatgaagagcaccgcttcggggtgcgccataaagaa
cgcatcaaagcgatgcgcgccgacgtcgatattctgaccctgaccgcaacgccaattccg
cgtacgctgaacatggcgatgagcggcatgcgcgatctgtcgattatcgccacaccaccg
gcgcgtcgtctggcggtgaaaacctttgtccgcgagtacgataatctggtggtacgcgag
gcgatcctgcgtgaggtactgcgcgggggccaggtttattatctttataacgacgttgaa
aatatccagaaagccgcggacaggctggccgagctggtaccggaagcgcgtattgccatc
ggccacgggcagatgcgcgagcgcgagctggagcgggtgatgaacgacttccaccaccag
cgctttaacgtactggtgtgtaccaccatcattgaaaccggcattgatatcccgacggcg
aataccatcattattgagcgtgcggatcactttggtctggcgcagcttcatcagctgcgc
ggtcgcgtcggccgttcgcatcatcaggcttacgcctggctattgaccccgcatccgaaa
gcgatgaccaccgacgcgcaaaagcgtctggaagccatcgcctcgctggaagacctcggt
gcaggctttgcgctggccacgcacgatcttgagatccgtggtgccggcgaactgctgggc
gaggatcagagcggctccatggaaaccatcggcttctcgctctatatggagctgctggaa
aacgcggttgatgccctgaaggccggacgcgagccgtcgctggaagatctcaccagccag
cagaccgaggtcgagttgcgtatgccgtccctgctgccggatgatttcattcctgatgtg
aatacccgcctgtcattctacaaacgcattgccagcgcgaagaatgaaaatgagctggaa
gagatcaaagtggaactgattgaccgctttggcctgctgcccgatgcggcgagaaatctg
ctggatatcgcgcggctgcgccagcaggcgcagaagctggggatccgcaaacttgaaggt
aatgaaaaaggcggcgtcattgaattcgccgagaagaaccacgtcaacccgatgtggctg
attggcctgctgcaaaaacagccgcagtatttccgcctggatgggccaacccgtctgaaa
tttacccaggagctggcggatcgcaaaacccgtatggactgggtgcgtaactttatgcgg
cagctcgaagagaacgcggtcgcgtaa
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