Escherichia coli KO11FL: KO11_05675
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Entry
KO11_05675 CDS
T02104
Symbol
trcR
Name
(GenBank) sigma 54-dependent transcriptional regulator of rtcBA expression
KO
K14414
transcriptional regulatory protein RtcR
Organism
ekf
Escherichia coli KO11FL
Brite
KEGG Orthology (KO) [BR:
ekf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
ekf03000
]
KO11_05675 (trcR)
Transcription factors [BR:
ekf03000
]
Prokaryotic type
Other transcription factors
Others
KO11_05675 (trcR)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcR
Sigma54_activat
Sigma54_activ_2
AAA_5
AAA
Mg_chelatase
NACHT
AAA_16
AAA_22
AAA_30
AAA_7
AAA_33
AAA_19
AAA_2
AAA_14
T2SSE
ATPase_2
ResIII
TsaE
MCM
NPHP3_N
NB-ARC
Motif
Other DBs
NCBI-ProteinID:
AFH16122
LinkDB
All DBs
Position
complement(1231173..1232771)
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AA seq
532 aa
AA seq
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MRKTVAFGFVGTVLDYAGRGSQRWSKWRPTLCLCQQESLVIDRLELLHDTRSRSLFETLK
RDIASVSPETEVVGVEIELHNPWDFEEVYACLHDFARGYEFQPEKEDYLIHITTGTHVAQ
ICWFLLAEARYLPARLIQSSPPRKKEQPRGAGEVTIIDLDLSRYNAIASRFAEERQQTLD
FLKSGIATRNPHFNRMIEQIEKVAIKSRAPILLNGPTGAGKSFLARRIFELKQARHQFSG
AFVEVNCATLRGDTAMSTLFGHVKGAFTGARESREGLLRSANGGMLFLDEIGELGADEQA
MLLKAIEEKTFYPFGSDRQVSSDFQLIAGTVRDLRQLVAEGKFREDLYARINLWTFTLPG
LRQRQEDIEPNLDYEVERHATLTGDSVRFNTEARRAWLAFATSPQATWRGNFRELSASVT
RMATFATSGRITLDVVEDEINRLRYNWQESRPSALTALLGAEAENIDLFDRLQLEHVIAL
CRQAKSLSAAGRLLFDVSRQGKASVNDADRLRKYLARFGLTWEAVQDQHSSS
NT seq
1599 nt
NT seq
+upstream
nt +downstream
nt
atgcgtaaaacagtggcttttggctttgtcggtaccgtgctggattatgccggacgcggc
agtcagcgctggtcgaaatggcgtccgacgctttgtttatgccagcaagaatcgttagtc
atcgatcggctggaattgttgcacgacacccgctcgcgctcgctattcgaaacgcttaaa
cgcgatatcgccagcgtttcgccagaaacagaagtcgtgggcgttgagattgaactgcat
aacccgtgggatttcgaagaggtttacgcctgcctgcatgatttcgcccgtggttacgag
tttcagccagaaaaagaagactatttaattcacatcaccaccggcacccacgtcgcgcag
atttgctggtttctgctggcggaagcgcgttacctgcccgcccggctgatacaatcttca
cctccgcgcaaaaaagaacagccgcgcggcgcaggtgaagtgacgattatcgatctcgat
ttaagccgttataacgccatcgccagccgctttgccgaggaacgccagcaaacgcttgat
tttcttaagtccggcattgccacgcgtaacccccacttcaaccgcatgattgagcagatc
gaaaaagtggcgatcaaatcccgcgcgccgattctgcttaacggtccaaccggcgcgggc
aagtcatttctggcgcgacgcatcttcgagttaaaacaggcgcggcatcagtttagcggc
gcgtttgtggaagtgaactgcgccaccctgcgcggcgataccgccatgtcgacgctgttt
ggtcatgtaaaaggcgcgtttaccggggcgcgggaatctcgtgaaggtttattacgcagc
gccaacggcggaatgttgtttcttgatgagattggcgaactgggcgcagacgaacaagca
atgctgctaaaagccattgaagagaaaaccttttacccgtttggcagcgatcgccaggtg
agcagtgattttcagcttatcgccggaacggtgcgcgatttgcgccagctggttgccgaa
ggcaaatttcgcgaagatctgtacgcgcggatcaatctctggaccttcaccctgccgggt
ctacgccagcgccaggaagatattgaaccgaaccttgattatgaagtggagcgccacgcc
acactcactggcgacagcgtgcgttttaacaccgaagcgcggcgcgcctggttggctttt
gcgacctctccccaggcaacatggcgcggtaactttcgcgaactttctgccagcgtcacg
cggatggccacctttgccactagcggacgcatcactctggacgtggttgaagatgagata
aaccgtctgcgctataactggcaggagagccgcccctccgcgcttacggcgttgctgggc
gcagaggcagaaaacatcgacctttttgacaggctgcaactggaacacgtgatagctctc
tgtcgccaggcaaagtcgctttccgctgccggacgcctgctttttgatgtttcgcgccag
ggcaaagccagcgtcaatgacgcggatcggctacgcaaatacctggcgcgttttggtctg
acgtgggaagccgtgcaggatcagcacagctccagttga
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