Escherichia coli KO11FL: KO11_08305
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Entry
KO11_08305 CDS
T02104
Symbol
recJ
Name
(GenBank) ssDNA exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
ekf
Escherichia coli KO11FL
Pathway
ekf03410
Base excision repair
ekf03430
Mismatch repair
ekf03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
ekf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
KO11_08305 (recJ)
03430 Mismatch repair
KO11_08305 (recJ)
03440 Homologous recombination
KO11_08305 (recJ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ekf03400
]
KO11_08305 (recJ)
DNA repair and recombination proteins [BR:
ekf03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
KO11_08305 (recJ)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
KO11_08305 (recJ)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
KO11_08305 (recJ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHH
RecJ_OB
DHHA1
PEP-utilizers
Motif
Other DBs
NCBI-ProteinID:
AFH16642
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All DBs
Position
1757038..1758771
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AA seq
577 aa
AA seq
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MKQQIQLRRREVDETADLPAELPPLLRRLYASRGVRSAQELERSVKGMLPWQQLSGVEKA
VEILYNAFREGTRIIVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYGLSPE
VVDQAHARGAQLIVTVDNGISSHAGVEHARSLGIPVIVTDHHLPGETLPAAEAIINPNLR
DCNFPSKSLAGVGVAFYLMLALRTFLRDQGWFDERGIAIPNLAELLDLVALGTVADVVPL
DANNRILTWQGMSRIRAGKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAAGRLDDM
SVGVALLLCDNIGEARVLANELDALNQTRKEIEQGMQVEALTLCEKLERSRDTLPGGLAM
YHPEWHQGVVGILASRIKERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALERLDTLYP
GMMLKFGGHAMAAGLSLEEDKFELFQQRFGELVTEWLDPSLLQGEVVSDGPLSPAEMTME
VAQLLRDAGPWGQMFPEPLFDGHFRLLQQRLVGERHLKVMVEPVGGGPLLDGIAFNVDTA
LWPDNGVREVQLAYKLDINEFRGNRSLQIIIDNIWPI
NT seq
1734 nt
NT seq
+upstream
nt +downstream
nt
gtgaaacaacagatacaacttcgtcgccgtgaagtcgatgaaacggcagacttgcccgct
gaattgcctcccttgctgcgccgtttatacgccagccggggcgtgcgcagtgcgcaagaa
ctggaacgcagtgttaaaggtatgttgccctggcagcaactgagcggcgtcgaaaaggcc
gttgagatcctttacaacgcttttcgcgaaggaacgcggattattgtggtcggcgatttt
gacgccgacggcgcgaccagcacggctctaagcgtgctggcgatgcgctcgcttggttgc
agcaatatcgactacctggtaccaaaccgtttcgaagacggttacggcttaagcccggaa
gtggtcgatcaggcccatgcccgtggcgcgcagttaattgtcacggtggataacggtatt
tcctcccatgcgggggttgaacacgctcgctcgttgggcattccggttattgttaccgat
caccatttgccaggcgaaacattacccgcggcggaagcgatcattaaccctaacttgcgc
gactgtaatttcccgtcgaaatcactggcaggcgtgggtgtggcgttttatctgatgctg
gcgctgcgcacctttttgcgcgatcagggctggtttgatgagcgtggcatcgcaattcct
aacctggcagaactgctggatctggtagcgctggggacagtagcggacgtcgtgccgctg
gacgctaataatcgcattctgacctggcaggggatgagtcgcatccgtgccggaaagtgc
cgtccggggattaaagcgctgctggaagtggcaaatcgcgatgcgcaaaaactcgccgcc
agcgatttaggttttgcgctggggccacgtctcaatgctgccgggcgactggacgatatg
tccgtcggtgtggcgctgttgctgtgcgacaacatcggcgaagcgcgcgtgctggcaaat
gaactcgatgcgctaaaccagacgcgaaaagagatcgaacaaggaatgcaagttgaagcc
ctgaccctgtgcgagaaactggagcgaagtcgcgacacgctacccggcgggctggcaatg
taccaccccgaatggcatcagggcgttgtcggtattctggcttcgcgcatcaaagagcgt
tttcaccgtccggttatcgcctttgcgccagcaggtgatggtacgctgaaaggttcaggt
cgctccattcaggggctgcatatgcgtgatgcactggagcgattagacacactctaccct
ggcatgatgctgaagtttggcggtcatgcgatggcggcgggtttgtcgctggaagaggat
aaattcgaactctttcaacaacggtttggcgaactggttacagagtggctggacccttcg
ctattgcaaggcgaagtggtgtcagacggtccgttaagcccggccgaaatgaccatggaa
gtggcgcagttgctgcgcgatgctggcccgtgggggcagatgttcccggagccgctgttt
gacggtcatttccgtctgctgcaacagcggctggtgggcgaacgtcatttgaaggtgatg
gtcgaaccggtcggcggcggtccactgctggatggtattgcttttaatgtcgataccgcc
ctctggccggataacggcgtgcgtgaagtgcaactggcttataagctcgatatcaacgag
tttcgcggcaaccgcagcctgcaaattatcatcgacaatatctggccaatttag
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