Escherichia coli KO11FL: KO11_16380
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Entry
KO11_16380 CDS
T02104
Symbol
rnb
Name
(GenBank) exoribonuclease II
KO
K01147
exoribonuclease II [EC:
3.1.13.1
]
Organism
ekf
Escherichia coli KO11FL
Brite
KEGG Orthology (KO) [BR:
ekf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
ekf03016
]
KO11_16380 (rnb)
Enzymes [BR:
ekf01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
KO11_16380 (rnb)
Transfer RNA biogenesis [BR:
ekf03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
KO11_16380 (rnb)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
OB_RNB
S1
CSD2
OSR1_C
S1CSD-TOTE-2
ODP
PilZ
Motif
Other DBs
NCBI-ProteinID:
AFH18244
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Position
3450222..3452156
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AA seq
644 aa
AA seq
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MFQDNPLLAQLKQQLHSQTPRAEGVVKATEKGFGFLEVDAQKSYFIPPPQMKKVMHGDRI
IAVIHSEKERESAEPEELVEPFLTRFVGKVQGKNDRLAIVPDHPLLKDAIPCRAARGLNH
EFKEGDWAVAEMRRHPLKGDRSFYAELTQYITFGDDHFVPWWVTLARHNLEKEAPDGVAT
EMLDEGLVREDLTALDFVTIDSASTEDMDDALFAKALPDDKLQLIVAIADPTAWIAEGSK
LDKAAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTLSADGTIEDNIEF
FAATIESKAKLVYDQVSDWLENTGDWQPESEAIAEQVRLLAQICQRRGEWRHNHALVFKD
RPDYRFILGEKGEVLDIVAEPRRIANRIVEEAMIAANICAARVLRDKLGFGIYNVHMGFD
PANADALAALLKTHGLHVDAEEVLTLDGFCKLRRELDAQPTGFLDSRIRRFQSFAEISTE
PGPHFGLGLEAYATWTSPIRKYGDMINHRLLKAVIKGETATRPQDEITVQMAERRRLNRM
AERDVGDWLYARFLKDKAGTDTRFAAEIVDISRGGMRVRLVDNGAIAFIPAPFLHAVRDE
LVCSQENGTVQIKGETVYKVTDVIDVTIAEVRMETRSIIARPVA
NT seq
1935 nt
NT seq
+upstream
nt +downstream
nt
atgtttcaggacaacccgctgctagcgcagcttaaacagcaactgcattcccagacgcca
cgcgctgaaggggtggtaaaagccacagaaaaaggctttggcttcctggaagtcgacgcg
caaaaaagttatttcattccgccgccgcagatgaaaaaagtcatgcatggcgaccgaatt
atcgcggtgatccacagtgaaaaagaacgtgaatccgcagagccagaagaactggttgaa
ccgttcctgactcgtttcgtgggtaaagttcagggcaaaaatgaccgtctggccatcgtt
cctgatcatccactcttaaaagacgccattccttgccgcgcagcccgtggcctgaaccac
gagtttaaagaaggcgactgggcggttgccgaaatgcgccgtcatccgctgaaaggcgat
cgttctttctatgctgaactgacacaatacatcacttttggtgacgaccactttgtaccg
tggtgggttacccttgcgcgccataatctggaaaaagaagcaccagacggcgtcgctacc
gaaatgctcgatgaaggtctggttcgtgaagatctgaccgcgctggattttgtcaccatc
gacagtgccagcacagaagatatggatgacgcccttttcgctaaggcgttgccggatgac
aaacttcagctgattgtggcgattgccgatccaaccgcgtggattgctgaaggcagcaag
ctggacaaagccgcgaaaattcgcgcattcaccaactatctgcctggcttcaacatccct
atgctgcctcgcgagctttctgacgatctctgctcactgcgcgccaatgaagtccgcccg
gtactggcatgccgcatgacgctctccgctgatggcaccattgaagataatatcgaattc
tttgccgccaccatcgaatccaaagcaaagctggtgtatgaccaggtttctgactggctg
gaaaataccggtgactggcagcctgaaagtgaagcaattgccgaacaagtccgtttgcta
gcgcaaatttgccaacgccgcggcgagtggcgtcataaccacgcactggtgtttaaagat
cgcccggattaccgctttattctcggtgaaaaaggtgaagtgctggatatcgtcgccgag
cctcgtcgcattgccaaccgtatcgtcgaagaagcgatgattgccgctaacatttgtgcg
gcccgcgtactgcgcgataagctcggttttggcatctataacgtgcatatgggctttgat
ccggcgaatgccgacgcgctggcagcgttgctgaaaacgcacggtctgcatgtcgatgcc
gaagaagtgctcacgctggacggtttctgcaaactgcgtcgtgaactggacgcgcaacca
actggtttcctcgacagccgcattcgtcgcttccagtcatttgctgaaattagcactgaa
cccggtcctcactttggcctcggtctggaagcatacgccacctggacttcgccgatccgt
aaatatggcgacatgatcaaccaccgtctgctgaaagcggttatcaaaggcgaaactgcg
acgcgcccacaggatgaaatcactgtccaaatggccgagcgtcgccgtctcaaccggatg
gcagaacgtgatgttggtgactggttatacgcacgcttcctgaaagacaaagccgggacc
gacacccgtttcgcagcggaaattgtcgatatcagccgtggcggcatgcgtgttcgtttg
gttgataacggcgctatcgcctttattccggcacctttcttacacgctgtgcgcgatgaa
ctggtttgcagccaggaaaacggcactgtacaaattaaaggtgaaacggtttacaaagtg
actgacgttattgacgtcactattgccgaagtccgcatggaaacccgcagcattattgcg
cgcccggtcgcgtaa
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