Escherichia coli KO11FL: KO11_17525
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Entry
KO11_17525 CDS
T02104
Symbol
csgD
Name
(GenBank) DNA-binding transcriptional regulator CsgD
KO
K04333
LuxR family transcriptional regulator, csgAB operon transcriptional regulatory protein
Organism
ekf
Escherichia coli KO11FL
Pathway
ekf02026
Biofilm formation - Escherichia coli
Brite
KEGG Orthology (KO) [BR:
ekf00001
]
09140 Cellular Processes
09145 Cellular community - prokaryotes
02026 Biofilm formation - Escherichia coli
KO11_17525 (csgD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
ekf03000
]
KO11_17525 (csgD)
Transcription factors [BR:
ekf03000
]
Prokaryotic type
Helix-turn-helix
LuxR family
KO11_17525 (csgD)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
GerE
VpsT-like_REC
Sigma70_r4_2
HTH_24
HTH_40
HTH_23
Mcm-like_N
RNA_binding
DUF1799
Motif
Other DBs
NCBI-ProteinID:
AFH18472
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All DBs
Position
3677523..3678173
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AA seq
216 aa
AA seq
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MFNEVHSIHGHTLLLITKPSLQATALLQHLKQSLAITGKLHNIQRSLDDISSGSIILLDM
MEADKKLIHYWQDTLSRKNNNIKILLLNTPEDYPYRDIENWPHINGVFYAMEDQERVVNG
LQGVLRGECYFTQKLASYLITHSGNYRYNSTESALLTHREKEILNKLRIGASNNEIARSL
FISENTVKTHLYNLFKKIAVKNRTQAVSWANDNLRR
NT seq
651 nt
NT seq
+upstream
nt +downstream
nt
atgtttaatgaagtccatagtattcatggtcatacattattgttgatcactaaaccgtct
ttgcaagcgacagctctcttgcagcaccttaaacaatcgctggcaattacaggaaaatta
cataatattcaacgttctctggacgatatatcttcaggctctattattcttctggatatg
atggaagcagataaaaagcttatccattattggcaggatactttgagcaggaaaaacaac
aatatcaaaatattgttgctaaatacgcctgaagattacccgtaccgcgacattgaaaac
tggcctcatatcaacggcgttttttatgccatggaggatcaagaacgtgttgtcaatggg
ttgcaaggcgtcctgcgcggcgaatgctactttacgcaaaagcttgccagttacctgatt
acacattctggtaactatcgttataacagcacggaatcagccctccttactcatcgggaa
aaagagatcctgaataagctgcgtatcggcgcgtctaataacgagatcgctcgttcgttg
ttcatcagcgaaaatacggttaaaacgcatctttataatcttttcaagaagatagccgta
aaaaaccggacacaagcggtttcctgggcaaacgataacctcaggcgataa
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