KEGG   Escherichia coli KO11FL: KO11_22485
Entry
KO11_22485        CDS       T02104                                 
Symbol
hfq
Name
(GenBank) RNA-binding protein Hfq
  KO
K03666  host factor-I protein
Organism
ekf  Escherichia coli KO11FL
Pathway
ekf02024  Quorum sensing
ekf03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:ekf00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    KO11_22485 (hfq)
 09140 Cellular Processes
  09145 Cellular community - prokaryotes
   02024 Quorum sensing
    KO11_22485 (hfq)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:ekf03019]
    KO11_22485 (hfq)
   03036 Chromosome and associated proteins [BR:ekf03036]
    KO11_22485 (hfq)
Messenger RNA biogenesis [BR:ekf03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   Other RNA degradation factors
    Chaperones
     KO11_22485 (hfq)
Chromosome and associated proteins [BR:ekf03036]
 Prokaryotic type
  Nucleoid associated proteins
   Other nucleoid associated proteins
    KO11_22485 (hfq)
SSDB
Motif
Pfam: Hfq LSM Hfq_1
Other DBs
NCBI-ProteinID: AFH19457
LinkDB
Position
4777023..4777331
AA seq 102 aa
MAKGQSLQDPFLNALRRERVPVSIYLVNGIKLQGQIESFDQFVILLKNTVSQMVYKHAIS
TVVPSRPVSHHSNNAGGGTSSNYHHGSSAQNTSAQQDSEETE
NT seq 309 nt   +upstreamnt  +downstreamnt
atggctaaggggcaatctttacaagatccgttcctgaacgcactgcgtcgggaacgtgtt
ccagtttctatttatttggtgaatggtattaagctgcaagggcaaatcgagtcttttgat
cagttcgtgatcctgttgaaaaacacggtcagccagatggtttacaagcacgcgatttct
actgttgtcccgtctcgtccggtttctcatcacagtaacaacgccggtggcggtaccagc
agtaactaccatcatggtagcagcgcgcagaatacttccgcgcaacaggacagcgaagaa
accgaataa

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