KEGG   Eutypa lata: UCREL1_1959
Entry
UCREL1_1959       CDS       T03103                                 
Name
(GenBank) putative u4 u6 small nuclear ribonucleoprotein prp4 protein
  KO
K12662  U4/U6 small nuclear ribonucleoprotein PRP4
Organism
ela  Eutypa lata
Pathway
ela03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:ela00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    UCREL1_1959
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:ela03041]
    UCREL1_1959
Spliceosome [BR:ela03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   U4/U6 snRNP specific factors
    UCREL1_1959
SSDB
Motif
Pfam: WD40 WD40_Prp19 WD40_CDC20-Fz WD40_WDHD1_1st Beta-prop_EML_2 WDR55 EIF3I Beta-prop_TEP1_2nd Beta-prop_CAF1B_HIR1 WD40_MABP1-WDR62_2nd ANAPC4_WD40 Beta-prop_WDR90_POC16_2nd PRP4 NBCH_WD40 WDR90_beta-prop_4th Beta-prop_WDR75_1st Beta-prop_EML Beta-prop_SCAP WD40_MABP1-WDR62_1st Beta-prop_IFT122_1st Beta-prop_TEP1_C Beta-prop_EIPR1 Beta-prop_IFT140_1st Beta-prop_DCAF12 WDR54 Beta-prop_WDR19_1st Beta-prop_DCAF4 Beta-prop_RIG_1st Beta-prop_Vps41 Beta-prop_WDR75_2nd
Other DBs
NCBI-ProteinID: EMR70986
UniProt: M7TM40
LinkDB
Position
Unknown
AA seq 532 aa
MMHPSRQAYVEEASESTERGISLDEIPTDTDYEIPGAGAGIAPEKASAILSQFERKRRAA
TMAVPTDDGRVKARLREIGEPITLFCEGPADRRDRLRELLTVRAERGDAALLAGEDPDVA
MEDVMVAAGGGEGDQQEDQEEEFYTTGSEELLRARQDIARFSLPRARRRLAFQKQEATVP
LRTHVKFRKQVRDRLQAFELQGSQTAGDRNVSMTRISPNGEVVAAGNWGGSIKLIEIPSL
DEKMTLRGHNNRVGGISWSPNATLPEGNVSRDSVNLASGGADGQVYLWSLTKDTPLASLQ
GHAQRVCRVEFHPSGRYLATASEDTTWRLWDVESTTELLLQEGHSRGVFAVSFNSDGSLL
ASGGTDSIGRIWDLRSGRTVMVLGHQDGHIKPIHGIDWGSDGHRVLTGSADGWTKCWDVR
KVQMIGGLGAHSSAVSDLRWYKGLDDPILGTAPGEDDKGNQIPKKSGAFFVSSGFDQKVK
IFSADDWSLVQTLHGHTGPVASVDISRDGRWIVSGGHDKTVKLWSRLDNEGV
NT seq 1599 nt   +upstreamnt  +downstreamnt
atgatgcacccgtcgcgtcaggcgtacgtggaggaggcatccgagtccacggaacgcggc
atcagcctcgacgagatccccacagacaccgactatgagatccctggtgccggagcggga
atcgccccggagaaggcctcggccatcctatcgcagttcgagcgcaagcggcgcgcagct
accatggcggttccgacggacgacgggcgagtgaaagcgcgtctgcgcgagatcggggag
cctataacgctgttctgcgagggtcccgccgaccgccgagaccggttgcgcgagctgctg
acagtgcgagcagagcgcggggacgcggcgctactggcgggcgaggatccggatgtcgcc
atggaagatgtgatggtagctgctggtggtggggaaggggatcagcaggaagaccaggag
gaggagttctacaccaccggtagcgaggagctgttgcgcgcccgccaggacatcgcgagg
ttctccctgccgagggcgagacggcgtctcgcgttccagaagcaggaggccactgtcccg
ctgaggacccacgttaagttccgcaagcaggtgcgcgaccggctgcaggctttcgagctg
caggggagtcagacggccggggatcggaatgttagcatgacacggatatcgccgaatgga
gaggtcgttgcggccggcaactggggcggttcgattaagttgatcgagatcccatcgctc
gatgagaagatgacgctgcgcgggcataataatagggtcggtggtatttcgtggtcccct
aatgctacgctacccgaggggaatgtctcaagggatagtgtgaacctggcgtccggcggc
gccgatggtcaggtctacctctggtctcttacgaaagatacgccgctcgcgagccttcaa
gggcatgcgcaacgggtttgcagggtggagtttcatccgtccggacggtacctggcgacg
gcctcggaagatactacgtggcggctgtgggacgtggaatcgactacggagttactatta
caagagggacactcccgcggcgtcttcgcggtctcgttcaattccgacggctcgctgctg
gcgagcggtggcacggatagcatagggaggatatgggatctacggtctggcaggacggtt
atggttctagggcatcaggacggtcacatcaagcccattcacggcatcgattggggctcc
gacggccacagggtgcttacgggttcggcggatgggtggaccaagtgctgggatgtgcgg
aaggtgcagatgatcgggggtttgggcgcacatagcagcgcggtgtcggacctcaggtgg
tacaagggcctggacgacccgatactgggtacggcacccggagaggacgacaagggtaac
cagatcccgaagaagtcgggggcgttcttcgtgtcgagcggtttcgaccagaaagtcaag
atcttctcggcggatgattggagtctggtccagacgctacatggacatacgggaccggtt
gctagtgtggatatcagcagagatggccggtggattgtgagtggtggtcacgataagact
gtgaagctttggagtcgccttgataatgaaggcgtctag

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