Eutypa lata: UCREL1_6035
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Entry
UCREL1_6035 CDS
T03103
Name
(GenBank) putative dshct domain-containing protein
KO
K12599
antiviral helicase SKI2 [EC:
5.6.2.6
]
Organism
ela
Eutypa lata
Pathway
ela03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ela00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
UCREL1_6035
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ela03019
]
UCREL1_6035
Enzymes [BR:
ela01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
UCREL1_6035
Messenger RNA biogenesis [BR:
ela03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
UCREL1_6035
mRNA degradation factors
3'-5' decay
Ski complex
UCREL1_6035
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DSHCT
Ski2_N
DEAD
MTR4_beta-barrel
MTR4-like_stalk
Helicase_C
DEXQc_Suv3
ResIII
Motif
Other DBs
NCBI-ProteinID:
EMR66972
UniProt:
M7SRV7
LinkDB
All DBs
Position
Unknown
AA seq
1281 aa
AA seq
DB search
MATADLVSALRKLQLANEQADADFNIDDVLFQQGPRKRAKQDPDELKAELEQKFLTPSQK
FSTEWLNRLQQRWDCPADLTELFRIAPTQTRTVTRFQRQGLEGRVTGYKNVTVPANSATA
KNSTSLTRKPGNRADFVRGAASFFPFAPGGLEGVEATAAMEDQMLTSGGAGTDGPTNKLE
RVIKLGAEGGLLEVAPGLQRGIDFSKKKSKVDEKQAKAIEAELDQEPEQGPEPENINGHL
TTNGVEEETDQEESEDIDNLLPVEFPALEPHGNLAASSARKAGKEWAHMVDINKDIANFR
ELVPDMAREWPFELDTFQKEAIYHLEGGDSVFVAAHTSAGKTVVAEYAIALAARHMTKAI
YTSPIKALSNQKFRDFRQEFDEVGILTGDVQINPEASCLIMTTEILRSMLYRGADLIRDV
EFVIFDEVHYVNDLERGVVWEEVIIMLPEHVSLILLSATVPNTHEFASWVGRTKQKDIYV
ISTPKRPVPLEHFLWAGKDIFKIVDSQKRFLDKGWADANQAIRGKDKALPAPATASRGGA
NQRGNQRGSQRGGQQQRGGRGGNQQRGRGGPPRASHTPGHMGRAGRAGGFVSVNQDKNLW
VHLVHFLRKSSLLPACIFVFSKKRCEENADALSNQDFCTAQEKSHVHMIIEKSIARLRPE
DRVLPQIIRLRDMLSRGIAVHHGGLLPIVKEMVEMLFAQTLVKVLFATETFAMGLNLPTR
TVVFSGYRKHDGHSFRNLLPGEYTQMAGRAGRRGLDPVGSVIIVPPGGIDEAPPVTDLKK
MILDPPSKLRSQFRLTYNMILNLLRVEALKIEEMIKRSFSEHATQQLLPEHEKAVKVSEA
DLAKVKREPCDICDPSLDDCHQASMNYKQLTQELYKGLLTIPIGRKMFTQQRLIVWNKDG
VRTPGIILSEGFSTKALGGEPTIHIFGIKTGRETRDSTDILPLVPTLRNLFTPLPSTRRF
VTGKNAHVPLSEIECLTGTITTGIIPGYFEGGEKLHDARDRMLNICKTWDSDNWNEMDFS
KIKSLPLQEIIGKRKQEEQAIQATATTPCPNFLKHFAMCHDQWLIKEHISSLRQALSDQN
LQLLPDYEQRIEVLKDLSFVDADTRIQLKGKVACEIHSADELVLTELILDNVLAEYEPAE
IAALLSAFVFQEKTDAVPTLTGSLERGMKTIVAISEKVNAVQTERQVIQSADDSNDFVSR
PRFGLMEVVYEWARGMSFKNITDLTDVLEGTIVRTITRLDETCREVKNAARIVGDPDLYQ
KMQAAQEMIKRDITAVASLYM
NT seq
3846 nt
NT seq
+upstream
nt +downstream
nt
atggcgactgcagacctcgtttcggccttgcgaaagcttcagcttgcaaacgagcaagct
gacgcagatttcaacatcgacgatgtcttattccagcaaggaccccgcaagagagcgaag
caggatcccgacgagttgaaagcagaactggagcagaagtttctcacgccctcccaaaag
ttctcgaccgaatggctcaaccgcctccagcagcgctgggactgccccgccgatctgacc
gagcttttccgcatcgccccgacccagactcgcaccgtcacccgatttcagagacagggc
ctggagggtagggtaacgggctataagaatgtaaccgtcccggccaacagcgccaccgcc
aagaattccacctccctcacgagaaagcctgggaaccgagccgacttcgtacgaggagct
gccagcttctttcccttcgcgccgggtggtctggaaggtgttgaggctaccgcagccatg
gaggatcagatgctgacatctgggggtgctggtacagacggaccaaccaacaaattagag
cgcgtcatcaagctcggcgctgaagggggtcttcttgaggtggcacctggtctgcagaga
ggcattgacttctccaagaaaaaatccaaggtcgatgagaagcaagcgaaggctatcgaa
gcagagctggaccaagagcccgaacaaggtcccgagccagagaatatcaatggccacctg
accaccaatggcgtcgaagaggaaactgaccaggaagaaagtgaagatattgacaacttg
ctacctgttgaattccctgccttggaacctcatgggaatctcgcggcatccagcgctaga
aaggctggtaaggaatgggcacacatggtcgacatcaacaaggatatcgccaatttccga
gagcttgtccctgatatggccagagagtggccctttgagctcgatactttccagaaagag
gcaatatatcacctagagggcggcgattctgtatttgttgctgcacacacctcggctggc
aaaaccgtcgtcgcggagtatgctattgcactagctgcaagacacatgactaaggctata
tatacgtcacctataaaggccctaagtaatcagaaattcagagacttccggcaagagttt
gacgaagtcggtattcttactggcgatgtccagattaaccctgaggcaagctgtctgatt
atgacaaccgaaatcttgaggagtatgctgtacagaggggcagatctcattcgagacgtg
gagttcgtcatttttgacgaagttcactatgtcaatgaccttgagcgaggtgtcgtctgg
gaagaggtcataatcatgctcccggagcacgtgtctctgatccttctctctgcaacggtt
ccgaatacacacgaattcgcttcttgggttggtagaaccaagcaaaaagacatctatgtt
atttcgacccctaaacgaccggtgcccctggaacacttcttatgggctggcaaggacatt
tttaaaatcgtggatagccagaagaggtttttggacaaaggctgggcagatgccaatcaa
gccattcgtggcaaagacaaagcactccctgctcccgccactgcgtctcgtggtggagcc
aaccagcgaggtaaccaacgaggctcacaacgtggcggccagcagcaacgtggtggacga
ggcggcaatcaacaaagaggcaggggtggtccgcctagagccagtcatacgcctggtcat
atgggccgtgctggccgtgctggtggcttcgtgtctgtcaatcaggataagaacctctgg
gtacatcttgtacatttcttaaggaaatcaagtctactgccagcttgtatatttgtattc
tctaagaagcggtgtgaggagaatgcagatgctctgagtaaccaggacttttgcaccgct
caggagaagagtcacgttcacatgattatcgagaaatcgatagcacgtttacgccccgag
gatcgagttctaccacaaatcattcgccttcgcgatatgctaagcagaggtatcgccgtg
caccatggtggcctacttcccattgtcaaggagatggttgaaatgcttttcgctcagacg
ttagtaaaggtcctcttcgcgactgaaacctttgctatgggtctgaatttacctacaagg
acagttgtgttttcaggttataggaagcatgacggtcactcgttccgaaatttgcttccg
ggcgagtatacgcagatggctggcagagccggtcgtcgtggtctcgatccagttggatcc
gtcatcatcgtacctcctggaggtatcgacgaagcaccgccagtcaccgatctcaagaag
atgattctagacccgcctagtaaactacggtcgcagttcagattgacctacaacatgatc
ctgaatctgttgcgggtcgaggcattgaagatcgaggagatgattaagcgcagtttctcc
gagcatgccacacagcaactgttaccagagcacgagaaggcagtgaaggtttcggaagcg
gacctggctaaggtcaaacgggagccttgcgatatctgtgacccgagcttggacgactgc
caccaagcatcgatgaactacaaacaactaacacaagagctatataagggcttgctgaca
atccccattggaagaaagatgttcacacagcaacggctcattgtttggaataaggatggc
gtacggactcctggtatcattctctctgaggggtttagtacgaaagcgttaggtggcgaa
ccaacaatccatattttcgggatcaaaaccggccgcgagactcgagactcgaccgatatc
cttcccttagtccccaccttgcggaacttattcactcccctacctagtacgaggaggttt
gtgacaggcaagaacgcccatgtgcctttaagtgagattgagtgcctcacaggaaccata
acgacgggaatcattccgggttacttcgaaggcggagaaaaactacacgatgcaagggat
cgcatgttgaatatttgcaagacttgggactcggataattggaatgagatggacttcagc
aagatcaagagcttgccgttgcaagagatcatagggaagcgaaaacaggaagagcaggcc
attcaggcaacggctaccacgccgtgcccgaacttcctgaaacatttcgccatgtgccac
gaccaatggctcatcaaagagcacatctcgtctctccggcaggcgctctcggaccagaac
ctgcagctcctgcccgactacgagcagcggatcgaggtgcttaaggacctctcgttcgtc
gacgccgacacgcgcatccagctcaagggcaaggtggcgtgcgagatccactcggccgac
gagctcgtgctgacggagctgattctcgacaacgtgctggccgagtacgagccggcggag
atcgcggcgctcctgtcggccttcgtgttccaggagaagacggacgcggtgcccaccctg
acgggcagcctcgagcgcggcatgaagaccatcgtcgccatcagcgagaaggtcaacgcc
gtgcagaccgagcgccaggtcatccagagcgccgacgacagcaacgacttcgtgtcgcgg
ccgcgttttggcctgatggaggtcgtctacgagtgggcgcgcggcatgagcttcaagaac
atcaccgacctgaccgacgtcctcgagggcaccatcgtccgcaccatcacgcgcctcgac
gagacctgccgcgaggtcaagaatgccgcccgcatcgtcggcgaccccgatctctaccag
aagatgcaggccgcgcaggagatgatcaagcgcgatatcacggctgttgctagcttgtat
atgtag
DBGET
integrated database retrieval system
