Candidatus Electrothrix laxa: KKHLCK_10350
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Entry
KKHLCK_10350 CDS
T10500
Name
(GenBank) hypothetical protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
elax Candidatus Electrothrix laxa
Brite
KEGG Orthology (KO) [BR:
elax00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
elax03016
]
KKHLCK_10350
Enzymes [BR:
elax01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
KKHLCK_10350
Transfer RNA biogenesis [BR:
elax03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
KKHLCK_10350
Prokaryotic type
tRNA splicing ligases
KKHLCK_10350
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
CAK8721111
LinkDB
All DBs
Position
1:complement(2453271..2454479)
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AA seq
402 aa
AA seq
DB search
MMQSTSRSMKQVISTENKPIKLWLDDLEAGALEQAKHLANLPFVFRHIVLMPDAHQGYGM
PIGGVLATEGVVIPNAVGVDIGCGMCAVKTSVQHIERDALKKIMGDVRKRIPVGFNHHKK
AQDESFMPDSPSDGLDKLKIVRGEYRSTLKQLGTLGGGNHFLEIQQGSDGFVWLMIHSGS
RNLGYKVAHHYNKLAIELNQKWHTSVPEKWQLAFFSLDSQEGQDYLQEMQYCVDFALANR
RLMMQRVQEVFVEVVGEIAGEVQFAEMINIAHNYAAMEHHFRTDVMIHRKGATKASAGQL
GIIPGSQGTASYIVQGRGEPESFMSCSHGAGRRMGRKQALKDLDLAAEKERLDAIGVIHG
IRHVKDLDEAPGAYKDISQVMGNQEDLVDIVVELRPLAVIKG
NT seq
1209 nt
NT seq
+upstream
nt +downstream
nt
atgatgcaatcaacctcacgttctatgaagcaagttatcagcaccgaaaacaagcctatc
aagctctggctcgacgatctcgaagccggagccttggagcaggcaaagcatctcgccaat
ctgccttttgtcttccgccatattgtcctaatgccggatgcgcatcagggctacggcatg
cccataggcggtgtcttagccacagagggcgtggtgattcccaatgctgttggcgttgat
atcggctgcggaatgtgtgccgtaaaaacctctgtgcagcatattgaacgcgatgccttg
aagaagatcatgggcgatgtccgcaagaggataccggttggattcaaccatcataaaaaa
gctcaggacgaatccttcatgcctgatagcccttcggatggtcttgataaattaaaaatc
gttcgcggggaatatcgttccacacttaagcagttgggaaccttgggaggaggcaatcat
ttccttgagattcagcagggaagcgacggctttgtctggctgatgatccactctggaagc
cgtaacctcggctataaggtggctcatcattataacaaactggctattgagttgaaccaa
aaatggcatacctcggtaccggagaaatggcagttggcctttttttccctggacagccaa
gaagggcaggattatctccaagaaatgcagtattgcgtggattttgccttggcaaacagg
cggctgatgatgcagcgagtgcaggaagtttttgttgaggttgttggcgagatcgctgga
gaggttcagtttgccgagatgatcaacatcgcccataactatgcggcaatggagcatcat
ttcagaaccgatgtgatgatccaccgcaagggcgcgaccaaggcctctgctggtcagctt
gggattattcccggcagccaaggcactgcgagctatatcgtgcagggcaggggagagccg
gagagctttatgtcctgctcacacggggctgggcgcagaatgggacggaaacaggccctg
aaagatcttgatcttgctgcggaaaaagagcggcttgatgccatcggggtgatccatggt
atacggcatgtgaaggatctggatgaggcaccgggtgcttataaggatatttcccaggtt
atgggcaatcaggaggatctcgtcgatattgtggttgagctgcgtcccttggcggtgata
aaagggtag
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