Candidatus Electrothrix laxa: KKHLCK_16415
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Entry
KKHLCK_16415 CDS
T10500
Symbol
sbcB
Name
(GenBank) exodeoxyribonuclease I
KO
K01141
exodeoxyribonuclease I [EC:
3.1.11.1
]
Organism
elax Candidatus Electrothrix laxa
Pathway
elax03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
elax00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
KKHLCK_16415 (sbcB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
elax03400
]
KKHLCK_16415 (sbcB)
Enzymes [BR:
elax01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.1 exodeoxyribonuclease I
KKHLCK_16415 (sbcB)
DNA repair and recombination proteins [BR:
elax03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA exonucleases
KKHLCK_16415 (sbcB)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
KKHLCK_16415 (sbcB)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
KKHLCK_16415 (sbcB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Exonuc_X-T_C
RNase_T
Motif
Other DBs
NCBI-ProteinID:
CAK8725319
LinkDB
All DBs
Position
1:3865105..3866514
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AA seq
469 aa
AA seq
DB search
MTLLWHDYETWGIDPRRDRPAQFAALRTDSELEEISEPIMLYCRPADDFLPHPEAAMLTG
ISPQEAAGKGLNEAEFFGRINAAFSEPGTCGVGYNSIRFDDEVTRFGFYRNFIDPYAREW
QNGNSRWDIIDLVRLTYALRPEDINWPEKKDGSVSFKLEDLTAANGIEHNGAHDALSDVR
ATIALARLIKELKPRLYAYYFNLRSKHEAARMLDLRGHGVVLHVSGMYPAAQGCIAPVIP
LLQHPRNKNEIIVYDLRRDPQNLLRMTVDEMEDNLYTRNEDLPEGVERIALKGVHLNKSP
ALAPINTLTPGLAEQWQVNWQQVEQHCQQLLADSTLETRLVELYLRVPDTGIPDVDSALY
TGFISNNDRRLCDGLLRKSPEQLAEWVPGFEDERLHPLYFRYRARNWPETLNEKETDQWR
QFREARLLAGEFANELTLYKYQHILEEMLQQGIPENRQKLFKRLVEWVQ
NT seq
1410 nt
NT seq
+upstream
nt +downstream
nt
atgacgttattatggcatgattatgagacatggggtattgatcctcgtagggatagacct
gctcagtttgcagctcttcgaacagatagtgaactagaggagataagtgaaccgattatg
ctgtactgtcgtcccgcagacgatttccttcctcatccagaagcggctatgctgaccggc
atttcaccgcaggaggcagcaggaaaaggtctgaatgaagcagaatttttcggacgaatc
aatgccgccttttctgagcctggaacctgtggagtcggttataattccatccgttttgac
gatgaagtaacgcgttttggtttttatcgtaattttatcgatccgtatgctcgtgaatgg
cagaacggtaatagtcgttgggatattattgatttggtccgactgacctatgctttacgg
cctgaggatatcaactggcctgaaaagaaagacgggagcgttagctttaagctggaggat
ctaacagcagcaaacgggatagagcataacggtgcccatgatgctctgtccgatgtccga
gccaccattgctttagcgcgattaatcaaggagctcaagccgcgtctttatgcctattat
ttcaatttacgcagtaaacatgaggccgctcggatgctggatttgagggggcacggagtt
gttcttcatgtcagtggtatgtatcctgctgcacagggatgcatagctccggttattcct
ctgctgcaacacccgcgtaataaaaatgagattattgtctatgatctgcgccgagatccg
caaaatcttttgcgtatgacagtggatgagatggaagataatctttacacccgcaatgaa
gaccttccggaaggtgtggagaggattgctcttaaaggcgtacatctgaataagtctccg
gcgttagctcctattaatacgctgactccaggcctggctgagcagtggcaggttaactgg
cagcaggtcgagcaacactgtcagcagctactggcggattccaccctggagactcgtctc
gtagagttgtatcttcgggtaccggataccggtatacccgatgtcgattccgccttgtat
acaggttttatttccaataatgatcgcaggctttgtgacgggctgttgcggaagtctcct
gaacaactggcggaatgggtgcccggttttgaggacgaacgtttgcaccccctgtatttt
cgctatagggccagaaactggcctgaaacgctgaatgaaaaagagacggatcaatggcgg
cagttccgggaggctcgcctgcttgcgggtgaattcgctaatgaactcacgctgtataaa
tatcaacatattttagaggaaatgttgcaacagggaataccggagaacaggcagaaattg
tttaagcggctggtggaatgggtacagtga
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