Candidatus Electrothrix laxa: KKHLCK_17360
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Entry
KKHLCK_17360 CDS
T10500
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
elax Candidatus Electrothrix laxa
Pathway
elax03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
elax00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
KKHLCK_17360 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
elax03021
]
KKHLCK_17360 (rpoB)
03400 DNA repair and recombination proteins [BR:
elax03400
]
KKHLCK_17360 (rpoB)
Enzymes [BR:
elax01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
KKHLCK_17360 (rpoB)
Transcription machinery [BR:
elax03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
KKHLCK_17360 (rpoB)
DNA repair and recombination proteins [BR:
elax03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
KKHLCK_17360 (rpoB)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_3
RNA_pol_Rpb2_2
RNA_pol_Rpb2_7
RNA_pol_Rpb2_1
RNA_pol_Rpb2_45
Motif
Other DBs
NCBI-ProteinID:
CAK8725677
LinkDB
All DBs
Position
1:4060133..4064221
Genome browser
AA seq
1362 aa
AA seq
DB search
MKRVRKGFAKTRKLVEPPHLIAMQRHSYDRFLQMNVDPSQREDIGLQAIFKNIFPISDFN
GLCTLEFVNYSFGEHKYTVSECIERGMTYEVPVKITVRLITFEIDEETGVQSVRDIKEQE
VFLGSLPLMTDDGVFIINGTERVIVNQLQRSPGLFYTHDNGKSHISNKRLYSARIIPVRG
SWLDFEFDIKDILHVRIDRRRKLPVTTLLRALGYTDEELLREFYPIDTVQVTESGFRILF
QPETFIGQRLTSDLVNPADGEVLGKKGRKISKALAKRIVKAGIEFIEFSAEEILDRVLVI
DLLHPETGEVLAKCNDRLSEELIETIQANNIAAFEVLYIDNVNISESFRKTLSVDKVKDG
SQALIEIYRRLRPSSPPTVEIAQEFFNKLFYDPATYDLSVVGRYKINSKLGLDTPIEHRT
LTKEDIVLGVKHLVRLKDELREGDDIDHLGNRRVRTVGELCENQYRMGLVRMERAIKERM
NLQEVETLMPHDLVNPKPVTSAVKEFFATSQLSQFMDQTNPLSEVTHKRRLSALGPGGLT
RERAGFEVRDVHPTHYGRICPVETPEGPNIGLIVSLATYAKVNVYGFIESPYRVVKDRKV
TNEIKDYTALQEQGNVVAPANIHVGEDGMIIDDTLIARMDGEVVTVPSDEVTAMDIAPNQ
LVSVAASLIPFLENDDANRALMGSNMQRQAVPLLKPASPLVGTGVEKNLAQDSGACLLAG
GDGIVEEVDANRVVIRYDEPGTDGFDTGIGVYRLSKYKKTNQNTCFNQKPLILPGMRVKK
GDVLADGPSTEMGELALGKNVTIAFMPWRGYNFEDSILINERLLKEDTFTSVHIEIFDVV
ARDTKLGKEEITRDIPNIGDEALRNLDDSGIVRIGAEIRAGDMLVGKVTPKGETMLSPEE
KLLRAIFGEKAGDVKDTSLRVPPGVEGVVIDAKVFSRKGVDKDERSLMIEEQEISRLNRD
MEDELHSLKNGVRKSLCDLIVNRTAKKDILDVDGQVILPLGKKLTEESLDAVEFDQLRGL
DFSERAKYEDNLEEIFNNYSRQAQVVRERYEGIVARMEKGDDLPPGVVKMVKIYVATKRK
LAVGDKMAGRHGNKGVVSRLLPEEDMPFFADGTTVDVVLNPLGVPSRMNVGQVLECHLGF
AAKRLGEQVQKLAVAYEVEQVKDRLQTIYSEEEYSAITSGLSDEELLDKIRKYGHGIHMA
TPVFDGATEAEIRNMLIEAGVDEVGQSTLYDGLTGDKFDNKVTVGVMYMLKLHHLVDNKI
HARSTGPYSLVTQQPLGGKAQFGGQRLGEMEVWAMESYGAAYTLKEFLTVKSDDVEGRTS
MYEKIVKGNNFLDAGLPESFHVLVKELKGLCLNVELLSTEDQ
NT seq
4089 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagagtacgcaagggatttgccaaaacacgcaagcttgtagaaccaccgcatctt
attgctatgcagcggcactcctatgaccgttttctgcagatgaatgttgatccgtctcag
cgagaagatatcggtctgcaggcgatttttaaaaacattttcccgataagcgatttcaac
ggactttgtaccctggagtttgtaaattattccttcggagagcataagtatactgtttcc
gagtgtattgagcgagggatgacctatgaagtccctgttaagataacagtacgtttgatc
acctttgagattgatgaggaaaccggtgtgcagagcgtccgggatattaaggagcaggag
gtttttcttggttcgctcccgctgatgaccgatgacggtgtctttataataaacggaaca
gagcgcgttattgttaatcagcttcagcgttcaccgggacttttttatacccatgataat
ggtaagtcccatatttcaaataaacgtctttattccgctcgaattattccggtgcgcggt
tcatggcttgattttgaatttgacataaaagatatcctccatgtccgcattgacagaagg
cgtaagcttccggtgacgaccttgctcagagctctcggatacaccgatgaggagctgctg
cgcgaattttatcccatagatactgttcaggtgacggaaagcggtttcagaattctgttt
cagccggaaacctttatcggtcagcgcttgacctcagatctggtgaatcccgcagacgga
gaagtgctcgggaaaaaagggagaaaaatttctaaggccctggcaaaaagaattgtaaag
gccggtatagagttcatagaattttctgctgaagaaatccttgatcgggtgttggtcatt
gatctactccaccctgaaaccggcgaagttctagccaaatgcaatgaccgactgagcgag
gaactgatcgaaacgatacaggcgaataatatagccgcgttcgaggttctctatatagac
aatgtaaatatttctgaatcctttagaaagaccttgtctgttgataaggtcaaggatggg
tctcaggctctaattgagatttatcgaagacttaggccttccagccctcctactgttgaa
atcgctcaggaatttttcaataaactcttttacgatccagccacctatgatctttctgtt
gtaggacgttacaagattaactccaagcttggtcttgatacgccgatagagcatcgcact
ctgaccaaggaagatattgttctcggcgtgaagcatctggttcgactcaaggatgagcta
cgtgagggtgatgatattgatcatcttggtaatcgtcgggtacgcacagttggtgagctc
tgcgaaaatcagtacaggatgggtcttgttcgtatggaacgggcgatcaaggagcggatg
aatcttcaggaagtcgaaaccctgatgccccatgatcttgtcaatccaaagcctgtgacc
tcggctgtgaaagagttttttgctacctcacagctctcgcagtttatggatcagaccaat
cctctttccgaggtgacccataagcggcgcctgtcggcgttaggaccgggcggtttgacc
agagagcgagctggctttgaggtacgcgatgttcatcctacccattacggtcgtatttgt
cctgttgaaacacctgaggggccgaacatcgggcttatcgtgtcgctggcaacctatgca
aaggttaatgtctacggttttatagagtccccctatcgcgtggttaaggatcgtaaggtc
acaaacgagattaaagattataccgctcttcaggagcagggcaatgtggttgctccggcc
aacatccatgtgggtgaggacggaatgattattgatgatacattgattgcccgtatggac
ggtgaggttgttacggttccttctgatgaagtaacggcgatggatattgcgccgaatcag
ctggtttctgttgcggcctccttgattccttttctggaaaatgatgatgcgaaccgggcc
ttgatgggatccaacatgcagcgtcaggccgtaccgcttcttaaaccggcttctcccctt
gttggaacaggggttgagaagaatttggctcaggattcaggggcctgtctgttggctggt
ggtgacggtatcgtagaagaagttgacgctaaccgggtggtaattcgttacgacgaaccg
ggtacagatggctttgataccggaattggcgtttatcgtctttcaaagtataaaaagaca
aaccagaatacctgttttaatcagaagccgttgatcctgccgggtatgcgggtgaaaaaa
ggggatgtgctggcagatggcccgtccaccgagatgggtgagcttgctctggggaaaaat
gtgaccatcgcttttatgccttggcgcggatacaactttgaggactccattctcattaat
gagcggcttctgaaagaggatacctttacctctgttcatatcgagatatttgatgtggtg
gcccgtgatacgaagttaggcaaagaggaaattacccgtgatatccctaacataggcgac
gaggcgttgcgtaatcttgacgattcaggcattgttcgcatcggggccgagattcgtgct
ggcgatatgctggtcggtaaggtaactccgaaaggggagactatgttatcgcctgaggaa
aaacttctgcgagccattttcggagaaaaagcaggcgatgtcaaggatacttcattgaga
gtacctccgggcgttgaaggtgtggttatcgacgcaaaggtcttctcccgcaaaggcgtg
gataaagatgagcgtagcctgatgattgaggagcaggagatcagccgcctgaatcgagat
atggaggatgaacttcacagtctgaaaaacggggttcgtaaaagtttatgcgacttgatt
gtgaaccggactgccaaaaaggacatccttgatgtagacggtcaggtaattcttcctctt
ggcaagaaacttactgaagaaagcctagatgcagtggagtttgaccagctgcgtggcctt
gatttttcagaacgggctaaatatgaggacaatctggaggaaatctttaataattactcc
cgtcaggctcaggtagtccgtgagcgctatgaaggtattgtcgccaggatggagaaaggt
gatgatttgcctccgggcgtggtcaaaatggtgaagatctatgttgccaccaagcgtaag
ttggctgtgggcgataagatggctgggcggcatggaaataagggtgttgtttccaggttg
ttgccagaagaggatatgcctttctttgctgatggaaccactgttgatgtggtcctgaat
cctttgggtgtaccctcacgtatgaatgttggtcaggtgcttgagtgtcatctgggtttt
gccgctaaacgcctgggagagcaggttcagaagttggctgttgcttacgaggttgagcag
gttaaggatcgcttgcaaacaatttattcagaggaagaatatagcgcaataaccagcggc
ctctcagatgaggagttgcttgataagatacgaaagtatggtcacggcattcatatggcc
acaccggtttttgatggtgccacagaggctgagattcgcaatatgcttattgaagctggt
gtcgatgaggtggggcagtccactttgtacgatggtcttaccggagataaatttgataat
aaggtgacagtcggtgttatgtacatgctcaagctgcaccatctggtagacaataaaatt
catgctcgttccacagggccgtactctttggtcacgcagcagcctttgggtggaaaggcc
cagtttggtggtcagcgactcggagagatggaggtctgggctatggagtcgtacggtgcc
gcttataccttgaaggaatttcttaccgtcaaatctgatgatgttgaaggaagaacttca
atgtatgaaaagattgtcaagggcaataattttcttgatgctgggttgcctgagtccttt
cacgtattggtgaaagaattgaaaggactttgtctgaatgttgaactgttatcgacagaa
gatcagtag
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integrated database retrieval system
