Elizabethkingia miricola: VO54_00120
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Entry
VO54_00120 CDS
T03757
Symbol
recQ_1
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
elb
Elizabethkingia miricola
Pathway
elb03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
elb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
VO54_00120 (recQ_1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
elb03019
]
VO54_00120 (recQ_1)
03400 DNA repair and recombination proteins [BR:
elb03400
]
VO54_00120 (recQ_1)
Enzymes [BR:
elb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
VO54_00120 (recQ_1)
Messenger RNA biogenesis [BR:
elb03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
VO54_00120 (recQ_1)
DNA repair and recombination proteins [BR:
elb03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
VO54_00120 (recQ_1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
RecQ-1-like_HTH
Helicase_C
RQC
HRDC
RecQ_Zn_bind
ResIII
HTH_40
Helicase_Sgs1
Motif
Other DBs
NCBI-ProteinID:
AJW61614
LinkDB
All DBs
Position
133043..135250
Genome browser
AA seq
735 aa
AA seq
DB search
MNTKSANIAESLKKYFGFTTFKGYQEQIISTLLEGNDVFVLMPTGGGKSLCYQLPALMSE
GTAIVVSPLIALMKNQVDAVNGLSSEEGVAHVLNSSLNKTQTKTVMDDIRNGRTKLLYVA
PESLIKEEYIDFFKEVPISFFAIDEAHCISEWGHDFRPEYRNLKSIIDKIADVPVIALTA
TATPKVQDDIQKTLGMTNALVYKESFNRPNLFYEVRPKVNIDKEIVKFIKAQNGKSGIVY
CLSRRKVEEFAQLLQVNGLNALPYHAGLDAKTRVTNQDKFLMEEVDVIVATIAFGMGIDK
PDVRFVIHYDIPKSLESYYQETGRAGRDGGEGHCIAFYDPKDIEKLEKFLAQKPVSEREI
GLQLLNEVVGYVETSMSRRQYLLYYFGEKFDPVNGAGAKMCDNSVNPPVLKDASEDLTKI
LSLVNDLGQKFRAKDLVAVIAGKENAVTKSYKLENNHHFGSGKDKEDNYWKSIIRQAVVQ
DFLLKDIETYGVLKLTKKGLDCIDGKLKSKFEIAEDRVYNLAETAKISSEVTLGNTARGL
DDKLFSLLKEVRKKVAQKNNIPPYTVFQDPSLEDMTVQYPISIDEISKIYGVGEGKAKKF
GKEFADFIKKYVEENDIDRPDDMVLKQVANKSSHKVFIIQNTDKKIDLEDIAKAKNLTMD
ELLSEMESIVYQGTKLNIDYYIDENFDEDIVEGFMEFMMESESDSMKTLCTEFSDELSDE
EIRMLRIKFISDVAN
NT seq
2208 nt
NT seq
+upstream
nt +downstream
nt
atgaatacaaaatctgcgaacatagcggagtcattgaaaaagtattttggctttacaaca
ttcaaagggtatcaggaacaaattatttccacactattagaaggaaatgatgtttttgtc
ttgatgccaacgggtggaggtaaatcattatgctaccagttgccggcattaatgagcgag
ggaacagctattgtggtatcaccattaatagcattaatgaaaaatcaggtagatgcggtt
aacgggctttcttctgaagagggagtagcacacgttcttaattcttcgttgaacaaaact
cagacgaaaaccgtgatggatgatatccggaacggaaggacaaagctactttatgtagct
ccggaatcgttgattaaagaagaatatatagacttctttaaagaggttcctatttcgttc
tttgcaatagacgaggcgcactgtatttcagaatgggggcatgatttccgtcctgaatac
agaaatttaaaaagtattatcgataaaattgcggatgttcctgttattgcactaacggct
acagcaactccgaaagttcaggatgatattcagaaaacacttggtatgacgaatgctctt
gtatataaagagtctttcaacagacccaacttattttatgaagtacgcccgaaagtaaac
attgataaagagattgttaagtttatcaaagcccaaaatggtaaatcagggattgtttac
tgtctcagcagaagaaaagtagaagaatttgcacagctgcttcaggtaaacggccttaat
gcattaccgtatcatgctggtttagatgcaaaaacacgtgtcaccaatcaggataaattc
ctgatggaagaggtagatgttattgtagcaactatagcattcgggatgggaattgacaag
ccggatgtaagatttgtaattcattacgatatacccaaaagtttagaaagttattatcag
gaaactggacgagccggaagagacggaggagaaggacattgtattgctttctacgatccg
aaggacattgaaaaacttgaaaagtttttggctcagaaaccagtttcggaaagagaaatc
gggttacagctgcttaatgaagtagtggggtatgttgaaacatccatgagccgtcgccag
tacctgctgtattattttggtgaaaagtttgatccggtaaatggagctggtgccaagatg
tgtgataattcagtaaatccgcctgtattaaaagatgcaagtgaggatttgacgaaaatt
ctgagccttgtaaatgatcttggacaaaaattcagagcaaaagatttggtcgctgtaatt
gcaggtaaagaaaatgccgtaaccaagtcgtataaacttgaaaacaatcaccactttgga
agcggtaaagataaggaggataattactggaaatctattatccgacaggctgtagttcag
gattttttattaaaagatattgaaacctacggtgtactaaagcttacgaaaaagggatta
gattgtatcgacggtaagctgaaatcgaaatttgaaatagcagaagacagagtatataat
ctggcagaaactgccaaaatatcttccgaagttacattaggaaatacagcacgcggactg
gacgataaattgtttagcttactaaaagaggtgaggaaaaaagtagcccagaaaaataat
attccgccatatacagtattccaggatccaagtttggaggatatgacagtacaatatcct
attagtatagacgagatttctaagatatatggagtaggagaaggtaaggctaagaaattc
ggaaaggaatttgcggattttataaaaaaatatgttgaggaaaacgatatcgaccgtccg
gatgatatggtactaaagcaggtagcaaataaatccagccataaggtttttattattcag
aatacggataagaaaattgatttggaggatattgctaaagctaaaaatctgacaatggac
gaattgctttccgaaatggagagtatcgtttatcagggaacgaaactaaatatcgattat
tatatcgacgaaaattttgatgaagatatcgtagaagggtttatggaatttatgatggag
tctgagagcgatagtatgaagactttatgcactgaattttctgacgaactttccgacgag
gaaatccgaatgctgcgtataaaatttattagtgatgtagcgaactaa
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