KEGG   Elizabethkingia miricola: VO54_00305
Entry
VO54_00305        CDS       T03757                                 
Symbol
priA
Name
(GenBank) Primosomal protein N'
  KO
K04066  primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4]
Organism
elb  Elizabethkingia miricola
Pathway
elb03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:elb00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03440 Homologous recombination
    VO54_00305 (priA)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:elb03400]
    VO54_00305 (priA)
Enzymes [BR:elb01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     VO54_00305 (priA)
DNA repair and recombination proteins [BR:elb03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   HR (homologous recombination)
    RecBC pathway proteins
     VO54_00305 (priA)
SSDB
Motif
Pfam: PriA_3primeBD DEAD ResIII PriA_C Zn_ribbon_PriA Helicase_C Cas3-like_C_2 AAA_19 IstB_IS21 AAA_30 DUF4885 PhoH NPHP3_N Tudor_5 Connexin50 TsaE NB-ARC SLFN-g3_helicase AAA_16 nSTAND3 Zeta_toxin
Other DBs
NCBI-ProteinID: AJW61794
LinkDB
Position
342962..345400
AA seq 812 aa
MFAQLILPLNIKGTYTYKVPVFLYGKLAIGMRVVVPFGGKKLYTGIVAEIHDREPEAFLP
KEIISALDNEAILPEEQLKFWQWVSDYYLCNVGEVYRFAFPSSLKLESETYVKRNPDVEV
DYEVLDVHEIHLMQALEVKSVINLQELEAFIPRKEVMKTLNSLIDERLIVIDEKISEKYK
AKEVSYIRLKEGLLESVALHEILSILNKAPKQKDLFLAILDKATSENPFVKKSELFEDKF
FSSQQLKALVDKGYVEEFYLQKDRIDSYDGDLEQIEQLTDLQQKALWKIVKQYEEKDVVL
LHGVTGSGKTHLYISKIEETVASGKNVLMLFPEVALTKQITQRLEKKYGQLLGFYHSKLT
DFEKVEIWRKVKNNQLKIVLGTRNALFLPFQNLGMVIVDEEHDSQYKTTTVQPFFNAKDA
AIVLGKFYEAKVLLGSATPSVESYYSALTNKIGLVKLDERFGESKVPKINLIDFKEAQNL
KTTNGSFTIQMIMEIREQLEQKKQVIILHNRRGYANVIECESCGYTQCCSNCDVVMTYHK
VSNELKCHYCGQRSAVPKQCPSCHSENLTTKGLGIQQLEEEVQRLFPEAEVGRMDLDAMR
TKFAYEKFFERVENQELDIIIGTQMISKGLDFDHVDLVVVPKSDAMLHIQDFRAEERAYQ
LFTQMAGRAGRTSQHGRMLLQTYNPYQTIFEKLSKDPDHIYEYFIQERNRFLYPPFVKLI
FIELKHRREDKVERASQFLGSVLRKYLPEECILGPEKSQIFRINNLYQYQILLKLPKGKK
YNLFKQFVSTSIDEFNEISGYKSVKLNLYVDF
NT seq 2439 nt   +upstreamnt  +downstreamnt
atgtttgctcagctcattttgccattaaatattaaaggaacttatacctataaagttcct
gtttttttatatggtaaactggcgatcggaatgcgtgttgtagttccttttggcggaaaa
aaactttatacggggattgttgctgaaattcatgacagagaaccggaagcatttttacca
aaagaaattatttccgctttggataatgaagctatcctgccggaggagcaactgaaattc
tggcaatgggtttcggattactatttgtgtaatgtaggtgaagtataccgttttgcattt
ccttcctctttaaaactggaaagcgaaacttatgtaaagaggaacccggatgtagaagtt
gactatgaagtactggatgttcacgagatacatctgatgcaggcattggaggtaaagtcc
gtgattaatctgcaggaacttgaagcatttattcccagaaaagaggtcatgaagacgctt
aacagtctgatcgacgagcgtctgattgttattgatgagaaaattagcgaaaagtataaa
gctaaagaggtttcttatatcagattgaaagaaggattgctggaaagtgtagcgcttcac
gaaatcctttcgatactgaataaagcgcctaaacaaaaagatctttttctggccattctg
gataaagcaacctccgaaaatccgtttgtaaaaaaatcagaactctttgaagataaattt
ttcagcagccagcagctaaaagcacttgttgataaaggctatgtggaagagttttatttg
caaaaagatcgtatagactcgtatgacggggatttggaacaaatagaacagcttacagat
cttcagcaaaaagctttgtggaaaattgtaaagcagtacgaagagaaagacgttgtattg
ctgcatggtgttacgggatctggtaaaacccacctgtatatttccaaaatagaagaaaca
gtagcttccggaaagaatgtattaatgcttttcccagaagtagcattgaccaagcagatc
acccaaagattagagaaaaaatacggacaattactcggtttttaccattccaaattaacc
gactttgaaaaggttgaaatttggagaaaggtgaaaaataaccagttgaaaattgttctg
ggaactcggaatgctctctttttaccatttcagaatcttgggatggtaattgtagatgaa
gaacacgattcccaatataaaacaacaactgttcagcctttttttaatgcaaaagatgcg
gcaattgttttaggaaagttttacgaagcaaaagttctgctgggcagtgcaacaccttct
gtcgaatcttattattcggccttaaccaataaaattggattggtgaaattagatgaacgt
tttggcgaaagcaaagttcctaagataaacctgatcgattttaaagaagctcagaatctg
aaaactaccaatggcagctttacaatccaaatgattatggagatcagggagcaattggag
cagaagaagcaggttatcatccttcacaatcgccgtggatatgccaatgtgatagaatgt
gaaagttgtggttatacacaatgttgtagtaattgcgatgttgtgatgacttatcataaa
gtatctaacgaactgaagtgtcattattgtggtcagagatcggcagtgcctaagcaatgt
ccgtcttgtcattccgaaaatcttacaacaaaaggtttaggaatccagcaattggaagaa
gaagttcagcgtctgtttcctgaagcagaagttggacgaatggatttggatgctatgcgg
actaaatttgcttacgagaagttctttgaaagagtagaaaatcaggaactggatattatt
attggtacccagatgatttctaaaggactggattttgatcatgtggatcttgttgttgtt
ccaaaatcagatgcaatgttgcatattcaggacttccgggcagaagaaagagcttatcaa
cttttcactcagatggcaggacgcgccggaagaacttcgcaacacggaagaatgctgcta
cagacttataatccttatcagaccatttttgagaaattgtcaaaggatccggaccacata
tacgaatactttattcaggaaagaaacagattcttatatccgccttttgtgaaattaatt
ttcatagaattaaaacaccgccgggaagataaagtagaaagagcatcccagtttctaggc
tctgtcctaagaaagtatttgccggaagaatgtatactgggaccagaaaaatcacagatt
ttcaggattaataatttataccagtatcagattttactaaaacttcctaaaggaaaaaaa
tacaatctgttcaaacaatttgtctctacttcaatagatgaattcaatgaaatttcgggt
tacaaaagtgtgaaattgaatctctatgtcgatttttaa

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