Elizabethkingia miricola: VO54_01104
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Entry
VO54_01104 CDS
T03757
Symbol
cshA
Name
(GenBank) DEAD-box ATP-dependent RNA helicase CshA
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
elb
Elizabethkingia miricola
Pathway
elb03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
elb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
VO54_01104 (cshA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
elb03019
]
VO54_01104 (cshA)
03009 Ribosome biogenesis [BR:
elb03009
]
VO54_01104 (cshA)
Enzymes [BR:
elb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
VO54_01104 (cshA)
Messenger RNA biogenesis [BR:
elb03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
VO54_01104 (cshA)
Ribosome biogenesis [BR:
elb03009
]
Prokaryotic type
rRNA helicases
VO54_01104 (cshA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
AJW62586
LinkDB
All DBs
Position
1191911..1193599
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AA seq
562 aa
AA seq
DB search
MNLFTETNLSPEILKAIGELGYESPTEIQKQTIPFISSDVRDLIALAQTGTGKTAAFSLP
ILDMVDDTSRKIQFLVLCPTRELCLQITKDIKNYSKYLPNIKTVAVYGGSSINDQIRSLR
EKPQIIVGTPGRVIDLINRKSLDFSNIHWLVLDEADEMLSMGFKDDLETIISETPETKQT
FLFSATMSKEVERISKNYLTKPHRISVGSINEVKKNIKHEYYVVGYRQKKEALKRLIDNN
PNQYSIIFCRTRMETQEVADFLMQNGYAADALHGDLSQAQRDTVMKKFRLKNIDILVATD
VAARGLDVDSLTHVIHFSLPDDPEVFVHRSGRTGRAGKDGISIALIKPEESRKLKQIKSQ
SKIEIVEKIIPTGQEIIKAQVEGVFEKLFSEHENYFEFDASLIPDLSNFTKEELVGQLLQ
FQLRDMALYYENRNDIAEQKFNGRDDSERGSRRERSRDRDGRDRDRDRSSRDRGDRKSRK
KSENMVRFFFNLGKRDELKKVDVLDIINQSTKKSGKKADIGDIEILEKFTFFEVEKSFKN
EVMGNINNKKYKGREMRLEVAN
NT seq
1689 nt
NT seq
+upstream
nt +downstream
nt
atgaatttatttaccgaaaccaatttaagtcctgaaattctgaaggctattggtgaacta
ggctacgagagccctactgaaatccagaaacaaacaatcccctttatatcatcagacgtt
agagatcttatcgctctggcgcagacgggtaccggaaaaacagcagctttttcccttcca
attttggatatggtagatgacacaagccgcaaaatccaatttttggtgttgtgtccaacg
cgcgaattatgtcttcagattacaaaagacataaaaaactactctaaataccttcctaat
attaagactgttgccgtatatggtggtagcagcattaatgaccaaatcagatcgcttcgt
gagaaaccacaaattattgttgggactccgggacgtgttatcgatttgatcaatcgtaaa
tctttggatttttccaatattcactggttggtattagacgaagcagatgaaatgctttca
atgggcttcaaagatgatttggaaacaatcatcagcgaaactccggaaaccaaacagact
ttccttttctcagctacaatgagcaaggaagtagaacgtatttctaagaattatttgact
aaaccgcacagaatttctgtaggttctattaacgaggttaagaagaacattaagcatgaa
tattatgtagtaggatatcgtcagaaaaaagaagctttgaaaaggcttattgacaataac
ccgaatcagtattctattattttctgccgtacccgtatggaaactcaggaagttgctgat
ttccttatgcaaaatggttatgcagcagatgcacttcacggagacctttctcaggcacag
cgtgatactgtgatgaagaagttccgcttaaagaacatcgatatactagttgctaccgac
gttgctgcaagaggattagatgtagattctttaactcacgttatccatttctctttacca
gatgatcctgaagtattcgtacacagaagtggtagaactggtagagctggaaaagatggt
atttccattgctttaattaaacctgaagaaagccgcaaactgaagcagattaagagccag
agtaaaatcgaaattgttgagaaaataattcctacaggacaagagattatcaaagctcag
gtagaaggtgtttttgaaaaattattctctgagcacgaaaattattttgaatttgatgct
tctttgattccggatctttctaacttcactaaagaagaacttgttggccagttattacag
ttccaacttcgtgacatggcattatactacgaaaatcgtaatgatattgctgagcagaag
tttaatggaagggatgattccgaaagaggaagcagacgcgaacgcagccgtgacagagat
ggcagggacagagatagagacagaagcagcagagaccgtggggatcgtaaatccagaaag
aaaagcgaaaacatggtacgtttcttctttaatctaggaaagagagatgaactgaaaaaa
gtagatgtactggatatcattaatcagtctactaaaaaatcaggtaaaaaagctgatatc
ggagatattgaaattttagagaaattcactttcttcgaagtagaaaaaagcttcaaaaat
gaagtaatgggtaacattaacaacaaaaaatacaaaggcagagagatgcgtttggaagtt
gctaactaa
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