Elizabethkingia miricola: VO54_01112
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Entry
VO54_01112 CDS
T03757
Symbol
rhlE_2
Name
(GenBank) ATP-dependent RNA helicase RhlE
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
elb
Elizabethkingia miricola
Pathway
elb03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
elb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
VO54_01112 (rhlE_2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
elb03019
]
VO54_01112 (rhlE_2)
Enzymes [BR:
elb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
VO54_01112 (rhlE_2)
Messenger RNA biogenesis [BR:
elb03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
VO54_01112 (rhlE_2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
ERCC3_RAD25_C
P-loop_SecA
AAA_22
Cas3-like_C_2
UvrD-helicase
Shikimate_DH
Motif
Other DBs
NCBI-ProteinID:
AJW62594
LinkDB
All DBs
Position
complement(1199865..1201145)
Genome browser
AA seq
426 aa
AA seq
DB search
MTFDDLKLIEPISKALQEEGYKTPTSIQEQAIPKILAGKDLLGCAQTGTGKTAAFAIPIL
QLLTERSENKHRKGVIKALILTPTRELAIQIEENFEAYGRHLPLKTMVIFGGVKQGAQEE
KLKRGVDILVATPGRLLDFISQGIITLKNLDIFVLDEADRMLDMGFVHDVKRILKHLPEK
RQNLFLSATMPKEIQKLASEILVNPVKVEVAPVSSTADTIDQSVFFVDKDDKINLLIHLL
QDQSLSPVIVFSRTKHGADKIAKKLNQSKISAEAIHGNKSQNARQNALSNFKSGKTRILV
ATDIAARGIDIDNLKYVVNFELSDVAETYVHRIGRTGRAGASGTSFSFVDGLDLVNLRNT
EKLIGKKIFVNKEHPFHTDDLVEQKRDSNNKPVFGGARPSNAGNNNNSNKRNVKTSKKPF
FRGKKK
NT seq
1281 nt
NT seq
+upstream
nt +downstream
nt
ttgactttcgacgatttaaaattaatagaacctatttccaaagcattgcaggaagaaggt
tacaagactccgacctctattcaggagcaggcaataccgaaaattcttgccggaaaagat
ctattaggatgtgcacaaaccggtaccggaaagacggccgcttttgctattcctatctta
cagcttcttacagaaagaagcgaaaataaacaccgtaaaggtgttataaaagcattgata
ttaacgccaacaagagagctggcaatacaaatagaagaaaacttcgaagcttacggaaga
cacttgccattgaaaacaatggtgatcttcggtggagtaaaacaaggtgctcaggaagaa
aagctaaaaagaggagtagatatactcgtagcaactccggggcgtttgttagactttata
agccagggaattattacgctgaagaatctggatatttttgttctggatgaagcggacagg
atgctcgatatgggttttgttcatgatgtaaagcgtatcttaaagcatttgccggagaaa
agacaaaatcttttcctttctgcaacaatgcccaaagaaatacaaaaactagcttccgaa
atattggtaaatcctgtaaaagtagaagtagcacctgtttcttctacagcggatactatt
gatcaatctgttttctttgtagataaggatgataaaattaatcttcttattcatctttta
caggatcaaagtttatctcctgttattgtcttctctcgtacgaagcatggagctgataaa
attgcaaaaaaacttaatcagtctaaaatatcagctgaagccattcatgggaacaaatcc
cagaatgcaagacaaaacgctttgagtaatttcaagagcggaaaaaccagaattctggta
gctacagatattgcggcaagaggaattgatattgataacctgaaatatgttgtaaacttc
gaactttcagatgtagcggaaacttatgttcaccgtattggaagaacgggtagagcagga
gcttcaggaacttcattctcatttgttgacggattagatctagtgaatctgagaaataca
gaaaaattaattggaaagaaaatttttgtaaacaaagaacatccttttcataccgatgat
ttggtagagcaaaaaagagattccaataataaaccggtttttggaggtgcaagaccttca
aatgctggaaataacaataacagcaataaaagaaatgtaaagacttctaagaagcctttc
tttagagggaaaaagaaatag
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