Elizabethkingia miricola: VO54_01141
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Entry
VO54_01141 CDS
T03757
Symbol
pcrA_1
Name
(GenBank) ATP-dependent DNA helicase PcrA
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
elb
Elizabethkingia miricola
Pathway
elb03420
Nucleotide excision repair
elb03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
elb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
VO54_01141 (pcrA_1)
03430 Mismatch repair
VO54_01141 (pcrA_1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
elb03400
]
VO54_01141 (pcrA_1)
Enzymes [BR:
elb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
VO54_01141 (pcrA_1)
DNA repair and recombination proteins [BR:
elb03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
VO54_01141 (pcrA_1)
MMR (mismatch excision repair)
Other MMR factors
VO54_01141 (pcrA_1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
Viral_helicase1
UvrD_C_2
AAA_30
PcrA_UvrD_tudor
ResIII
DEAD
Motif
Other DBs
NCBI-ProteinID:
AJW62623
UniProt:
A0ABD5B9G3
LinkDB
All DBs
Position
complement(1232930..1235248)
Genome browser
AA seq
772 aa
AA seq
DB search
MDYLKGLNESQYEAVTTIQGPLMVLAGAGSGKTRVLTMRIAHLIQNGVDPFNILALTFTN
KAAREMKERIARVVGDSDAKSIWMGTFHSIFARILRMEAHYLGFPSNFTIYDSQDALNVI
KKVLKEMSIDSDLYKPKKVLNRISQYKNNLITVNAYFNNPELMEADEMANMKLLGEIYRK
YVETCYKSGAMDFDDLLLRTNELLTRFPEVLAKYQDRFRYILVDEYQDTNHSQYLIVKAL
ASKFENLCVVGDDAQSIYAFRGANIYNILNFKKDYPDAVTVSLEQNYRSTQNIVNAANDV
IAKNQQQFKKNVFSENEPGDKIQVYRSLSDADEANFVASQILENSMRNQRKYSDFAILYR
TNSQTRAFEDALRRKNIPYKVYGGLSFYQRKEIKDLIAYLRLLVNENDQEALLRIINYPT
RGIGETTQNKLIVTADQLNISMAELLNNLQMYGPQTGFNAGTLNKLSEFWNMIKAFQVMM
KTETVYQVAMDVAQKSGLLKLLKDDQTPEGVSRMENIQELMNSLQGFIEEQQQLEDGDPG
LSNFLENIALSTDTQDKDDDNNKVSLMTIHLSKGLEFPVVHIVGLEENLFPSFMSANTRE
ELEEERRLFYVALTRAEKQAIFSYAVSRFQWGKITDSEPSRFLSEVDTMYLDFLNPATDT
RFRNSSGLTSSLFDDAPPPRLVKKDAPKKLAPTPALTPKNLKPVASAKINNPSGGTTDHI
EVGDMVRHDRFGVGEVVFLDGTDPQNIKAKVLFQHEGEKNLILKFAKLTKIS
NT seq
2319 nt
NT seq
+upstream
nt +downstream
nt
atggattatctgaaaggacttaatgaatcacaatacgaagcggtaacaactatccaggga
ccattgatggtattagcgggagcaggttccggaaaaaccagagtacttaccatgcgtatt
gctcatcttatacaaaatggtgtagatcctttcaatattctggcactaacctttaccaat
aaagcagcacgagagatgaaagagcgtattgcaagggtagtgggggatagcgatgctaag
agtatatggatgggaacatttcactccatatttgccagaatcctacgtatggaagctcat
taccttggatttccatctaattttaccatttatgatagccaggatgcactgaatgttata
aaaaaagtgctgaaagagatgtctatcgattcagatctgtataaacctaaaaaagtactg
aacaggatttcccagtataaaaataatttgattacggtaaatgcctatttcaataatccg
gaactaatggaggctgatgaaatggccaatatgaagctattaggcgagatataccgtaag
tatgttgaaacttgttataaatctggtgcaatggacttcgatgatttgttgttacgtacc
aatgagcttctaaccagatttccggaagtactggcgaaatatcaggacagattccgttac
attttggtagatgagtatcaggataccaaccactcccagtatcttattgtaaaagcactg
gcttctaaatttgagaacttgtgcgtggtaggagacgatgcacagtcaatctatgccttc
cgtggtgcgaatatctacaacattctgaactttaaaaaagattatccggatgcggttact
gtttccctggaacagaattaccgttctactcagaatattgtaaatgctgcaaacgatgtt
attgctaaaaatcagcagcagtttaagaaaaatgttttcagtgaaaacgaaccgggagat
aagatacaggtttaccgaagtctttctgatgctgatgaagccaacttcgttgcatcgcaa
attctggaaaacagtatgcgaaatcagcgtaaatacagtgattttgcaattctatacaga
accaactctcagacccgtgcatttgaagatgcattgagaagaaagaatattccatataaa
gtatatggtggactttcattctaccagagaaaagaaatcaaagatttaattgcttattta
agacttctggttaatgaaaacgatcaggaagctttgcttcgtattatcaactatccaaca
agaggtatcggggaaacgacgcaaaataaactgattgttactgccgatcaactgaatatt
tcaatggctgaattgctgaataaccttcagatgtatgggccacagacaggatttaatgca
ggtacactcaacaagctttcagaattctggaatatgatcaaagcctttcaggtgatgatg
aagacagaaaccgtttatcaggtggctatggatgttgcacagaagagtggactactaaag
ctgctaaaggatgaccaaactccggaaggtgtttcccgtatggaaaacattcaggaacta
atgaactcattacaagggtttattgaagagcaacaacagttagaagacggtgatcccggc
ctttctaatttccttgaaaatattgcactttctacagatactcaagataaggacgatgac
aacaataaagtatctttaatgaccattcacttgtcaaaaggtctggaattccctgtagtg
catattgtaggtctggaagagaatcttttcccgtcgtttatgagtgctaatacccgtgag
gagctggaagaagagagacgtttgttttatgtagcgcttacaagagctgaaaaacaggct
atattctcgtatgcagtttcccgttttcagtggggtaaaattacggattctgagccaagc
cgtttcttaagtgaagtcgatacaatgtatctggacttccttaatcctgcaactgataca
cgattcagaaattcttcaggacttacctctagtctttttgatgacgcaccgcctccacgc
ctggtaaaaaaagatgcacctaagaagctggcaccaactccggctttaacgcctaaaaac
cttaaacctgtagcttctgcaaaaattaacaatccatctggtggaaccacagatcatatt
gaagtaggggatatggtaaggcatgaccgttttggagtgggcgaagttgtctttctggac
ggaacggatccgcagaatataaaagcaaaagtattgttccagcatgaaggcgagaaaaac
ctgattctgaaattcgcgaagctgacgaaaatttcctaa
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