Elizabethkingia miricola: VO54_02397
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Entry
VO54_02397 CDS
T03757
Symbol
topA
Name
(GenBank) DNA topoisomerase 1
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
elb
Elizabethkingia miricola
Brite
KEGG Orthology (KO) [BR:
elb00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
elb03032
]
VO54_02397 (topA)
03400 DNA repair and recombination proteins [BR:
elb03400
]
VO54_02397 (topA)
Enzymes [BR:
elb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
VO54_02397 (topA)
DNA replication proteins [BR:
elb03032
]
Prokaryotic type
DNA Topoisomerases
VO54_02397 (topA)
DNA repair and recombination proteins [BR:
elb03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
VO54_02397 (topA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Toprim_C_rpt
Toprim
Toprim_4
MarR_2
HTH_Crp_2
Motif
Other DBs
NCBI-ProteinID:
AJW63857
LinkDB
All DBs
Position
2563590..2566130
Genome browser
AA seq
846 aa
AA seq
DB search
MSKNLVIVESPAKAKTIQKYLGNDFEVTSSMGHIRDLPKKGMGINLETFTPDYEVSPDKK
KLVTELKSLAKKADMVWLASDEDREGEAIAWHLAEELKLKEDKTKRIVFHEITKNAILKA
IENPRKIDNNLVNAQQARRVLDRIVGFEMSPVLWKKVKPGLSAGRVQSVAVRLVVEREKE
IHGFQSQASYKVEGTFLNDEKKEILAKLKKDFSTEQEAESFLSQCSTADFKVLNVEKKPG
QRSASAPFTTSTLQQEASNRLGYSVTSTMRVAQRLYEEGYITYMRTDSVNLSQEAINSAK
ATITKEFGEEYSAPRNYTTKNASAQEAHEAIRPTDFGVKTVGDAQLNKLYQLIYKRAMAS
QMANAKIEKTVIEIGNQKLPQHFEATGEVIIFDGFLKVYGITKNDEEDDENDDKLLPKVN
IGEALKYKKIIATEKYTKAPARFTEASLVRKLEELGIGRPSTYAPTIQTIQNREYVDKRE
IMAKEREIVQLTLTSSLKKETLTEKYGADKNKFLPTDIGVVVNDFLVNNFNEVLDYGFTA
RVEEAFDIIAEGNRAWKDVMTEFYGKFHPRIADVEENADRANGDRVLGVDPKTGKNVHAR
IGRFGAMIQIGETDDEEKPIFASLMPNQNITTITFEEAMELFKIPFNLNDYEGKEVVVGV
GRFGPYIKWGEAYISIPKTEDPLSVDNDRAIEIIEEKKRADAPIATYKGEPVTKGTGRFG
PFIKYKDIFVNVPKKYDFNNLSQSDINELIDAKLEKEANRYIQQWEDQKVSLENGRWGPF
IRFGKKMLKIPLKGKGEKYTAEDLQDISFDEVKKWIIAQDETAFKEKPKAKKASAKKAAA
KKPSKK
NT seq
2541 nt
NT seq
+upstream
nt +downstream
nt
atgtcgaaaaatctcgtaattgtggagtcccctgcgaaggctaagacgatacagaagtat
cttggtaatgactttgaagtaacctctagtatgggacacatccgtgatcttcctaaaaaa
ggcatgggtattaaccttgaaacatttactcctgattacgaagtttctccggataagaag
aagctcgttacagagcttaagtctttagcaaaaaaagccgatatggtatggctggcttcc
gatgaagaccgcgagggggaagctattgcatggcatctggcggaggaattaaaattaaaa
gaagataaaactaaaagaattgtatttcatgagattactaagaatgcaattcttaaagct
atagagaatccgagaaaaatagacaataatcttgtcaatgctcaacaggcaagaagagta
ctggatagaattgtaggttttgaaatgtctcctgttttatggaaaaaagtaaaaccaggc
ctttctgcaggacgtgtacagtcggtagccgtacgtcttgttgttgaaagggaaaaagaa
atccacggattccagtctcaggcttcttataaagtagaaggaacttttcttaatgatgag
aagaaagaaattttagcaaaactaaaaaaggacttttctacagaacaagaagccgagtct
ttccttagccaatgcagtactgcggacttcaaagttttaaatgtagaaaaaaaaccgggg
caacgttccgcttcagctccgtttaccacttctactctacagcaggaagcttcaaacaga
ttaggatattctgtaacctctacaatgcgcgttgcgcaacgtctgtacgaagaaggttac
attacctatatgagaacggacagcgttaacctttctcaggaggctattaattcggcaaaa
gcaactattacaaaagaattcggggaggaatattctgcaccgagaaactatactactaag
aacgcatctgcccaggaggctcacgaagcaattcgtcctaccgattttggtgtgaaaaca
gtaggagatgcacagcttaacaaattataccaactgatatataaaagagcaatggcaagt
cagatggccaatgctaaaattgagaaaacagtaattgaaataggaaaccagaaacttccg
caacattttgaagcaactggtgaagtgattattttcgatggtttcttaaaagtatatggt
attactaaaaatgatgaggaagatgatgagaacgacgataaacttctaccaaaagtaaat
attggtgaggctcttaaatacaaaaaaatcattgctaccgagaaatacacaaaagctcct
gcaagatttacagaagcatcgctggtaagaaaactggaagaactgggaatcggaagacct
tctacttatgctccaactatccagacgattcagaatcgtgaatatgtggacaagagagaa
attatggctaaggaacgtgaaatcgttcagcttactttaacttcttcactgaaaaaagaa
acacttacagaaaagtatggtgctgataagaacaaatttttaccaactgatataggcgtt
gttgttaatgacttccttgttaataacttcaacgaagttcttgattacggatttacagct
cgtgttgaggaagctttcgatattattgcggaaggaaacagagcatggaaagatgtaatg
actgaattctatggaaaattccacccaagaattgctgatgtagaagaaaatgctgacaga
gcaaacggtgaccgtgtgctgggagtagatcctaaaacgggcaaaaatgtacatgcaaga
atcggaagatttggtgctatgatccaaatcggagagacagatgatgaagagaaaccaatc
tttgcttctctgatgccgaatcagaatatcactacaattacttttgaggaagcaatggag
cttttcaaaataccttttaatcttaacgactacgaaggtaaagaagttgtggtgggtgtt
ggacgttttggaccttatatcaaatggggagaagcttatatcagcattcctaaaaccgaa
gaccccctgtctgtagataatgacagagctatagagattatagaggaaaagaagagagct
gatgctcctatcgcaacttacaaaggagaaccagtaacaaagggaaccggaagattcgga
cctttcataaaatataaggacatctttgtaaatgttccgaagaaatatgattttaataat
ctttctcaaagtgacatcaacgaactaattgatgccaaactggaaaaagaagcgaacaga
tatattcagcaatgggaggaccagaaggtttctcttgaaaacggaagatggggacctttc
attcgttttggaaagaaaatgctaaaaatcccattgaaaggaaaaggagaaaaatatact
gctgaagatttgcaggatatttccttcgatgaagtaaagaaatggatcattgctcaggat
gaaactgcttttaaagaaaaaccaaaagcaaaaaaagcatctgccaagaaagctgctgct
aaaaaaccttctaaaaaataa
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