Elizabethkingia miricola: VO54_03022
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Entry
VO54_03022 CDS
T03757
Symbol
recJ
Name
(GenBank) Single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
elb
Elizabethkingia miricola
Pathway
elb03410
Base excision repair
elb03430
Mismatch repair
elb03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
elb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
VO54_03022 (recJ)
03430 Mismatch repair
VO54_03022 (recJ)
03440 Homologous recombination
VO54_03022 (recJ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
elb03400
]
VO54_03022 (recJ)
DNA repair and recombination proteins [BR:
elb03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
VO54_03022 (recJ)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
VO54_03022 (recJ)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
VO54_03022 (recJ)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHH
RecJ_OB
DHHA1
DSPc
SIS_2
Motif
Other DBs
NCBI-ProteinID:
AJW64474
LinkDB
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Position
complement(3229602..3231311)
Genome browser
AA seq
569 aa
AA seq
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MMQRWIYKPTPSEDVIDSISSSLGFGYLASKILVMRGVDSYQKAREFFKPKASDIHNPFL
MADMQKAVERIATAIENGEKILVFGDYDVDGTTAVALMYLYLSKICDKKYLDFYIPDRNL
EGYGVSTEGIDYAKENGFSLIIALDCGIKSTDKVDYANSLGIDFIICDHHLPGDEIPKAA
AVLDPKRKDCEYPYKDLSGCGVGYKLCQALNTIYKISDHELQDLTDLLAISIAADIVPIT
GENRVFAKMGLNKLRKTKRQGLKILIPYEKLQNFTISNIVFEIAPKINAAGRISHGKAAV
ELMIAENAKQAHLIADQIVNLNDERKELDSNMTQQAIDQVIETKQEETFSTIVYQSEWNK
GVIGIVASRLIELYYKPTLVFTDGTNGEMVASARSVADFDLHNALDVCSDLFLKFGGHRA
AAGLSMEKKHFEAFKTKFEETVKNSIKEHQKTPSIEIDAEISLNDLTNDFFQFHRWLAPF
GPENMKPVLVIKNARVSGHVRKIGKQSSHLKFNIVQDSSRKGIECLAFKMGEHATDFKTK
TFDIAFTIEENHWKDNLTYYLNVRDVIFH
NT seq
1710 nt
NT seq
+upstream
nt +downstream
nt
atgatgcaacgatggatctacaaaccgacaccttccgaagacgtaatagatagtatcagc
tcttcgctgggatttggttatttagcatccaaaattctggttatgcgtggggtagattcc
taccagaaagccagagaattcttcaagccaaaagcttccgatatacacaatccttttctg
atggcagatatgcaaaaagcagtggagagaattgccacggctatcgaaaacggagaaaaa
atattagtctttggagattatgatgtagacggtacaactgccgttgcattaatgtacctg
taccttagcaaaatctgcgacaagaaatatttagatttttatattcctgacagaaatctg
gagggctatggtgtctccactgaggggattgattatgcaaaagaaaatggcttttcatta
attatcgcattagactgtggaatcaagtccacagacaaagttgactatgccaatagtctg
ggaattgactttataatttgtgaccaccaccttcccggtgatgagatcccgaaagcagca
gcagttcttgaccccaaacgaaaagactgtgaatatccttataaggatcttagcggctgt
ggtgttggctataaactttgccaggcattgaataccatctataaaatttcggaccacgaa
ttacaagatctaaccgatcttttggcgataagtattgctgcagatattgttcctataact
ggtgaaaacagagtattcgccaaaatggggctcaataaactgcgtaaaacaaaaagacag
ggattaaagattttaattccttacgaaaagcttcagaacttcacaatctcgaatattgtt
tttgaaattgctcctaaaataaatgctgccggcagaatttctcacgggaaagctgctgta
gagctaatgattgcagaaaatgctaaacaagcccacctcatcgctgatcagattgttaat
ctaaacgatgagagaaaggaattggacagtaatatgactcagcaggctatagatcaggtt
attgagacaaaacaagaggaaacattcagtacaattgtttatcagtctgaatggaataag
ggtgtaattggtattgttgcatccagactaatcgaattatattacaagcccactttggta
tttaccgatgggactaacggtgaaatggtagcttctgctcgttctgtagcagatttcgat
cttcacaatgcattagatgtatgttcagatttatttttaaaatttggaggacaccgtgct
gcagcagggctgtctatggagaaaaaacattttgaagcatttaaaacgaagttcgaagag
acagtaaaaaactctataaaagagcatcagaaaacgccaagcattgaaattgatgctgaa
atttcgctgaacgatttaactaatgattttttccagttccaccgatggctggctcctttt
ggtcctgaaaatatgaaacctgttttggtaataaaaaatgcccgagtaagcggtcatgta
aggaaaattggaaagcaaagttctcatttgaaatttaatattgttcaggattcttccaga
aaaggaatagaatgcttagccttcaaaatgggggaacatgccaccgacttcaaaactaaa
acttttgatattgcatttactattgaagagaatcactggaaagataatcttacttactat
ctcaatgtaagagatgttattttccattaa
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