Elizabethkingia miricola: VO54_03614
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Entry
VO54_03614 CDS
T03757
Symbol
sbcC
Name
(GenBank) Nuclease SbcCD subunit C
KO
K03546
DNA repair protein SbcC/Rad50
Organism
elb
Elizabethkingia miricola
Brite
KEGG Orthology (KO) [BR:
elb00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
elb03400
]
VO54_03614 (sbcC)
DNA repair and recombination proteins [BR:
elb03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
VO54_03614 (sbcC)
Archaeal homologous recombinant proteins
VO54_03614 (sbcC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_23
SbcC_Walker_B
AAA_29
AAA_21
SMC_N
ABC_tran
AAA_16
AAA_22
MMR_HSR1
AAA_18
Motif
Other DBs
NCBI-ProteinID:
AJW65041
LinkDB
All DBs
Position
complement(3861588..3865313)
Genome browser
AA seq
1241 aa
AA seq
DB search
MKILAIQIKNLASLENAEIDFTLEPLCSAGIFAITGPTGAGKSTILDALCLALYAKTPRY
RTAENGIDITDVKGNTIKQDDVRGILRDGTSNGYAEVDFVGIDGHHYATSWRVRRAHNKA
DGSLQNYEMTLKNITTGQSIPGKKTELLVEIERLVGLNFEQFTRSVLLAQGDFTAFLKAG
KDEKSSLLEKLTGTHIYSEISKSIFENHREQQQNLRDLTIRCEGILTLTSEELNALLERK
VILETSVKSEEQKIEDLNKEIHWHEQLIKIQDGVASAKQQYNLTNNDKTDALPREQKLNQ
IISLQPAKPLINSLNEVQNQLVVKSKLSKQLDSDLLSLQKQKKVLEDTLEDALNELNKKI
KEEEDAQPLLNEAKSLDAKLSEKTVQVKKAAEEVETAQNKQEQHRERLSQIKKKSDLIDQ
KIIILNQWKTDNEKHQSITEQENVILSKLKDAESILKNLNIYNSRIQNAEKEIENQQQRK
QELEIESQSHQKSILLLQTENDAVEKLLSSITIHDIEKDKATTDSSIEDIVSATAHWKLL
YNAINQEELLKKSVEQNKTDQEQQTEKWIEAEKLLETKKSVRDISLKILENTRLTATKNV
EDLRNQLKSEEPCPVCGSTTHPYTIYNPSLNLVLSEIEKEYRQAEENYEKHISLCSTLKQ
SAIQAEQTITKLETEISQKKVTIQELQCVWSEFHIYEKCEEQLFEERTNWLQKQLLEQKD
KQVNLAQQIQLYNKQKQQLETHRISFAEFSKKLTDTENNIKDVERKLKSLEEQKINDSGE
QEKERNKLEDMKQSLTVHFESQQWFQNWQANPEEFAKRIKKFALEWNDNSKKLDENTLEK
NILFEKLKGIQEQSSNIDDELKLKEQDLTLIRSQETELLTKRKTIFKGESTDTVEKGLKE
AVNTSRQTLEQKKKDTESIQSNITRAIAQIEHLEKDKTSLLERENKLKKEFGDWLSSYNH
QHQIKITADELLPLLELTQAWIENEIKSLRAIDDLLMQAKSILTERNTALETHTTQQVSE
KTWEELIQLQTEVLASSKQNFQAITEIGFRIKEDESNKSRIGHLLQDIEKQSLIVDNWAK
LNDIIGSADGKKFRQIAQEYTLDVLLSYANIHLEALNKRYVLERIPNSLGLQVIDQDMGD
EIRTIYSLSGGESFLVSLALALGLASLSSNRMTVESLFIDEGFGSLDPTTLNIAMDALER
LQNQGRKVGVISHVQEMTERIPVQIKVSKQQSGKSKVEIIQ
NT seq
3726 nt
NT seq
+upstream
nt +downstream
nt
atgaaaatactggccatacaaattaaaaacttggcatcgcttgaaaatgctgaaatagac
tttacgcttgaacctctttgctctgctgggatatttgctattaccggaccaacaggcgca
ggtaaatctactattcttgacgctctttgtctcgcactatatgccaagacaccaagatac
agaacggccgaaaatgggattgatattactgatgtaaaaggtaacacaatcaaacaggat
gatgttcgtggtattttaagagatggaacctccaacggttatgccgaagttgattttgta
ggtattgatggacaccattacgctacaagctggcgtgtaagaagagcccataacaaagca
gatggtagtcttcaaaactatgagatgactttaaagaatattactactggtcagagcatt
cctggaaaaaaaacagaactactggtagaaatagaacggttagtcggattaaattttgaa
caatttactcgctctgttctgctggctcaaggtgattttacagcttttttaaaagccggt
aaagatgaaaaatcatctttattagaaaaacttaccggcacccatatttattcggaaata
tccaaaagtatctttgaaaaccatcgtgagcaacaacaaaatttgcgagatcttacaata
cgatgtgaaggaatacttacccttacttctgaagaattaaacgctttactagaacgaaaa
gtgattttagaaactagtgtaaaatcagaagagcaaaaaatagaagatttaaacaaggag
attcactggcatgaacaattaataaaaatacaggacggagtggcatctgccaaacaacaa
tataaccttactaataatgataaaacagatgcattgcctcgtgaacaaaaacttaatcaa
attatcagtttacagcctgcaaaaccgctcatcaatagcttaaatgaagttcaaaaccaa
ctcgtagtaaaatcaaagttatcaaaacagcttgacagtgatttattgtctcttcaaaaa
caaaaaaaagtattggaagatacattagaagatgctttaaatgagcttaataaaaaaata
aaggaagaagaagatgcacaacctttacttaacgaagcgaaatcactagatgcgaaatta
tcagaaaaaacagtacaagtaaaaaaagctgctgaagaagttgaaaccgcccaaaataaa
caagagcaacaccgcgaaagattatcacagattaaaaaaaaatcagatttaattgaccag
aaaattataatacttaatcaatggaaaactgataacgaaaagcaccaatcaattactgaa
caagaaaatgtaatattatccaaactgaaggatgccgaatctattctgaaaaatctgaac
atttataattcccgaattcagaatgctgaaaaagaaatagaaaatcaacaacagagaaaa
caagagttggaaattgaatcgcaatctcatcagaaatcaatactcctgctgcaaaccgaa
aatgatgctgttgaaaaattattgtcaagcattactattcatgatattgaaaaagacaaa
gccacaacagattcttcaatagaagatattgtttcagcaacggctcattggaaattgttg
tataatgctataaatcaagaagaattacttaagaaatcagtagagcaaaataagacggat
caggaacaacaaacagagaaatggattgaagctgaaaaactccttgaaacaaagaagtca
gtaagagatatttcattaaaaatattagagaatacgagacttacagctaccaaaaatgta
gaagatctcagaaatcaattgaaatcagaagagccttgtccagtctgtggtagtactaca
catccttatactatatataatccaagtctgaatcttgtactttctgaaatagaaaaagaa
tacagacaagctgaggaaaactacgaaaaacatatttcgctttgcagtactttaaaacaa
tctgctatacaggctgaacaaactataacaaaactggaaacagaaatctcccaaaaaaaa
gtaacaatccaagaattacaatgtgtatggtctgagtttcatatttatgaaaaatgtgaa
gagcaattattcgaagaaagaactaattggcttcagaaacaattattagaacagaaagat
aaacaagtaaatttagcacaacaaatccagttatataataaacaaaagcaacaattggaa
actcacagaattagttttgcagaattttccaagaagctaactgataccgaaaacaatatt
aaagatgttgagagaaaattaaaatctctagaagaacaaaaaattaatgattccggtgag
caggaaaaagagaggaataagttggaggatatgaaacaaagcttaacagttcactttgaa
tcccaacaatggtttcaaaactggcaggcaaatcctgaagaatttgcaaagcgtatcaaa
aaatttgcattggaatggaatgataatagtaaaaaactggatgaaaacactttagagaaa
aatatattatttgaaaagcttaaaggaattcaagaacagtcttccaatattgatgatgaa
ctcaaattgaaagaacaagacctgactctgataagatcgcaagaaacggagcttttaact
aaacggaaaactatattcaaaggtgaatccacggacacagtagaaaaaggattaaaagaa
gcagtcaatacttcaaggcaaacgttagaacaaaaaaagaaggatactgaaagcatacaa
agcaatatcacacgagccattgcccaaatagagcatttagagaaagataaaacttctctg
ttagaaagagaaaataaattaaaaaaggaattcggtgattggctaagcagttataatcat
caacaccaaattaaaattacagctgatgaattattgccattattagaacttacccaagcc
tggatagaaaacgaaataaaaagcttacgtgcaatagatgatttattgatgcaggcaaaa
tctattttaactgaacgaaatactgcattagaaactcatactactcagcaagtatcggaa
aagacgtgggaagaacttatccaattgcaaacagaagttctagcatcatcgaaacaaaat
ttccaagctattactgaaattggatttagaataaaagaagatgaatccaataaaagccgc
attggtcatttattgcaggatatagaaaaacaatcactgatagtagataattgggcaaaa
ctcaatgacatcataggttcagctgacggcaagaaattccgtcaaattgctcaggaatac
acactggatgtattattaagttatgctaacattcatttggaagccctaaataaacgttat
gtactagagcgaatccctaattctttaggattacaagtcattgaccaagatatgggcgat
gaaatacgcactatttattctttgtccggaggagagtcatttttggtatctcttgcactg
gcgttaggcttagcttctctttcttccaatcgtatgacagttgaatccttatttattgat
gaaggttttggttctttagatcctacaacactcaatattgcaatggatgcattagaacgt
ttacagaatcagggacgtaaagttggtgtcatctctcatgtacaggaaatgacagaacga
ataccggtgcaaattaaagtaagcaaacaacagagtgggaaaagtaaagtggaaataatt
caataa
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