Elizabethkingia miricola: VO54_03726
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Entry
VO54_03726 CDS
T03757
Symbol
rhlE_3
Name
(GenBank) ATP-dependent RNA helicase RhlE
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
elb
Elizabethkingia miricola
Pathway
elb03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
elb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
VO54_03726 (rhlE_3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
elb03019
]
VO54_03726 (rhlE_3)
Enzymes [BR:
elb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
VO54_03726 (rhlE_3)
Messenger RNA biogenesis [BR:
elb03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
VO54_03726 (rhlE_3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
AAA_22
SNF2-rel_dom
UvrD-helicase
ERCC3_RAD25_C
Utp25_C
Flavi_DEAD
UTP25_NTPase-like
Cas3-like_C_2
SERF-like_N
Motif
Other DBs
NCBI-ProteinID:
AJW65152
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All DBs
Position
3988769..3989962
Genome browser
AA seq
397 aa
AA seq
DB search
MNFIQDFMENLIHLKPEKGNFRTMNFKSLNLINPIIRAITEAGYSKPTDIQNMAIPHILE
GKDIIGCAQTGTGKTAAFAMPVLQLLKKKNPEHKEIRTLILTPTRELAIQIEENFKVYSK
YLPLSQLCVFGGVGKGSQIAALRKRVDVLIATPGRLLDLCSDGHVNLSKIEILVLDEADR
MLDMGFVNDVKKILRLTPSKKQTLFFSATMPVSIRKFANTIVKNPVEVSVTPVSSTAKTI
EQSVYFVDKNRKTDLLINLLEDSSISRLLVFTRTKHGADRLVKQLGHTGIFAAAIHGNKS
QQARQKALEDFKKSKVRVLIATDIAARGIDIDELSFVINYELPNIPETYVHRIGRTGRAG
MEGKAVSFCDEDERSDLKNIQKLIGFTMPVGNQAGLY
NT seq
1194 nt
NT seq
+upstream
nt +downstream
nt
atgaattttattcaggattttatggaaaacctgattcacttaaagcctgaaaaaggcaat
ttcagaacaatgaattttaaaagtttaaatttaataaatcctattatccgtgccataaca
gaagccggatattcgaagcccaccgatatccagaatatggcgataccgcatattcttgag
ggaaaagatattattggctgtgcacagaccggaaccgggaaaacggcagcatttgcaatg
cctgttctacaattacttaaaaagaaaaacccagaacataaagaaatccgaacacttatt
ctaacccccacacgggagctggcaatacagattgaggaaaattttaaggtttatagtaaa
tatctgccattgtcacagctttgtgttttcggtggcgttggtaaaggaagccagattgca
gccttaagaaaaagagtagatgtattgatcgccacaccgggaagacttttagatttgtgc
agcgatggacatgtgaatctttccaaaattgaaattctggtactggatgaagcagacaga
atgcttgatatgggttttgtgaatgatgtgaaaaagattctcaggttaacaccctcaaag
aaacagacgctgtttttctctgcaaccatgcctgtttctatacggaaatttgcaaataca
attgtgaaaaaccctgtagaagtatcggtgacacctgtttcatcaactgcaaaaactata
gaacagtctgtatattttgttgataaaaatagaaaaactgatttacttatcaatcttctg
gaagactctagtattagccgcttattggtttttacgcgaaccaaacacggagcagaccga
ttggtaaaacaactgggacacacaggaatctttgccgcagcaattcacggaaacaaatcc
caacaagctaggcaaaaagcacttgaagactttaaaaagagtaaggttcgtgttttaatc
gctactgatattgccgcacgtggaatcgatatcgatgaactttctttcgttatcaattat
gaactcccgaatatcccggaaacttatgttcaccgaataggcagaaccggaagagccgga
atggaaggaaaagcagtttctttttgcgacgaggatgaacgttctgatttaaagaatatt
caaaagctcataggctttacaatgcctgtaggaaatcaggctggcttatactaa
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