Elizabethkingia miricola: VO54_03941
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Entry
VO54_03941 CDS
T03757
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
elb
Elizabethkingia miricola
Pathway
elb03030
DNA replication
elb03430
Mismatch repair
elb03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
elb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
VO54_03941 (dnaE)
03430 Mismatch repair
VO54_03941 (dnaE)
03440 Homologous recombination
VO54_03941 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
elb03032
]
VO54_03941 (dnaE)
03400 DNA repair and recombination proteins [BR:
elb03400
]
VO54_03941 (dnaE)
Enzymes [BR:
elb01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
VO54_03941 (dnaE)
DNA replication proteins [BR:
elb03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
VO54_03941 (dnaE)
DNA repair and recombination proteins [BR:
elb03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
VO54_03941 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
RNase_T
tRNA_anti-codon
Motif
Other DBs
NCBI-ProteinID:
AJW65366
LinkDB
All DBs
Position
4219064..4223725
Genome browser
AA seq
1553 aa
AA seq
DB search
MFLIFDTETTGLPRNFNAPLTDFDNWPRMVQIAWQLHDEHGNLIENQDYIIKPEGYDIPF
NAYRIHGISTEMAMREGRDLKEVLNEFKEVLKKTKVVAGHNVSFDYSIVGSEFLRKEVED
SLKDKPIVDTMEFGTNVCQLPGGRGGRFKSPKLEELSEKLFGHKFDEAHNAAADVNATAQ
AFFEMMRLEVYPLDRIFFDDVHMKAFKDHNPAVFKPFDIVIRRQVADSKKRKKTADFGDT
DDIDIGNFFHFYSHSIYSTLQATTGLADMVSIAEKNNFPAVGLVDLGNMMGAFKFIDEVE
KYNGNLKQKKQDAEAAEEKPDNYDEINSAKFLTPILGLELYISERYQQRQFTKDDPDRRT
QVVLLAKNFEGYKNLAKLSSIGFKEGYYAGVPRISRALISQYKDNLIALTGSLSCEVPST
ILELGEQRGEEIFQWWLNEFGDDFYVQIQNHQMDEEDYVNEILLKFADKHNVKILAQNET
YYTRKSDAKIQDIVACIKDGEKLSTPVGKGFGKRKGLNSEQFYLKNSEEVKQAFQMYPDA
FIAYDEFLNKFESYKLKRDVLLPKFDIPEEFQDAEDLNDGGKRGEMNFLRHLTYEGARKK
YEEITDDIRERLDFELDIIAKTGYPGYFLIVQDFCNEAKNMGVSVGPGRGSAAGSAVAYC
IGITNVDPIKYDLLFERFLNPERISMPDIDIDFDDEGRDRVIKWVIDKYGQNQVAQIITY
SVLGGKSAIKDAGRVLDVSIPETNNIAKLIPNTPGMNIAKVMKSDLKKFKPEDLPLVDEI
KGILNNPDDGRFNVLDSAYKMEGCIRNTGIHACGVIITPEDISNLVPVTIAAKDADILVS
QFDNSVAESAGLLKMDFLGLRTLTIIKDAVKLIKNRHGIEIIPDDIPLDDAKTYQLFKEG
RTIGIFQYESAGMQKYMRELKPTVFADLIAMNALYRPGPIKYIPNFINRKHGLEEIIYDL
PETQEYLQETYGITVYQEQVMLLSQKLANFTKGEADTLRKAMGKKQKAVLDKMFPKFIEG
GKKNNLDEEKLHKIWKDWEAFAEYAFNKSHSTCYAYIAYHTAYLKANYPAEYMASVMSNN
INNTKQITLFMEDCQAMGVDVLGPSVNESEYEFAVNEKGQIRFGLGAIKGIGEGPSEAIC
KERELGGRFTDIYSLFERIPSSQLNKRVVESLVFAGAFDELDSYHRAQYFDVDTAGRTNI
ERLLKYSNSFQDSKNSVENSLFADFADEVQIERPKINPAPEWQNMHKLNREKEAIGFYLS
AHPLDEFYYQYKFIQGALSKKSVVNKKLDEELEKAPENEKVEEQDDKDEVSTDIDFPVDI
LEVDGDEIIEEVIKKVDPRGKFNFLNLDEVDPYRDFVLQRDFSNLTPAEISKLKEKKFRS
KGNDNSKEYMVSGLITEYVIRDGYESGTKIAFITLEDYTGSYSFRLNDKDYMRLREKLGE
HRFVIFKIKFAPSKDFDRLYVNVTEVIDLKEAFDRYANQLSLVVPFNEVDQDDIEFFRRT
FAHNKGVHKLSFYLKDPVENHFVELNSMQTSVDISAETIKLLHEYKKYELFLN
NT seq
4662 nt
NT seq
+upstream
nt +downstream
nt
atgttcttgatttttgatacagaaacaactggtttaccccgaaattttaatgctccttta
actgacttcgacaactggccgcgtatggttcagattgcatggcagttacacgacgagcat
ggaaatcttatagagaatcaggattatattataaagcccgagggctacgatattccgttt
aatgcataccgcatccacgggatatctacagagatggcgatgcgtgaaggccgcgatctt
aaagaggtacttaacgagttcaaagaagtactgaaaaaaacaaaggtagtagcagggcat
aatgtaagctttgactacagtattgtaggatccgaatttcttagaaaggaagtggaggac
agtctgaaagacaagcctattgtagatacgatggagtttggtaccaacgtatgtcagctt
cccggaggtagaggtggaagattcaaatctcctaaactggaggaactttctgaaaaatta
ttcggacacaaattcgatgaagctcacaatgctgcagccgatgtaaatgctacagcacaa
gcattcttcgaaatgatgagattggaagtttatccactggatagaattttcttcgatgat
gtacatatgaaggcctttaaggatcataatcctgctgtcttcaaacctttcgatattgtt
atccgaagacaggttgctgattccaaaaaacggaagaaaaccgctgactttggtgatact
gatgatattgatatcgggaatttcttccatttttatagccacagtatttattcaacttta
caggcaacaactggtttggctgatatggtttccatagccgaaaagaataattttccggct
gtaggccttgttgacttgggcaatatgatgggtgcctttaagtttatcgatgaggttgaa
aagtataacggaaatcttaagcaaaaaaagcaggatgccgaagctgctgaagaaaagcca
gacaactatgatgaaattaacagtgctaagttccttactcctatattggggttagagctt
tatatttcggagcgttatcagcagagacaatttactaaagatgatccggacagaagaact
caggttgtattattggctaaaaactttgaaggatataaaaatctggcaaaactttcatct
atagggtttaaagaaggttattatgccggggttccaaggattagccgtgcactaatatct
caatataaagacaatcttattgcactgacaggaagtttgtcctgtgaagttccgtctact
attctagaattgggggagcaacgtggtgaggaaattttccagtggtggctgaatgaattt
ggtgatgatttctatgtgcagatacagaatcaccagatggatgaggaagactatgttaat
gagattttattaaagtttgcggataagcacaatgtaaaaatactggcacaaaacgaaact
tattatacccgtaaatcggatgctaaaatccaggatattgtagcctgtattaaagatggt
gagaaactttcgacacctgtaggtaaaggatttggaaaaagaaaaggtctgaacagtgaa
cagttttatctgaaaaatagtgaagaagttaagcaggcttttcagatgtatccggatgct
ttcattgcatatgatgagtttctgaataagtttgaatcttataaactaaaaagagatgtt
ctcttacctaagtttgatattcctgaggaattccaggatgctgaagacctgaatgacggt
ggtaaaagaggagaaatgaatttcctgagacatcttacctacgaaggcgcccgaaaaaaa
tatgaagagatcaccgatgatataagggaaagactggacttcgaactggatattattgct
aaaacagggtatccgggatatttccttattgtacaggatttctgtaatgaagctaaaaat
atgggggtatcggttggaccgggacggggatctgcagcaggatctgctgtggcttactgt
ataggaattaccaatgtagaccccattaaatatgatctcctttttgagcgttttcttaac
ccggaaaggatttcgatgcccgatatcgatatcgattttgatgatgaaggacgtgatcgt
gtcattaaatgggtaattgataaatatgggcaaaatcaggtagcacagattattacctac
tcagtactgggggggaaatcggctattaaagatgcaggaagggtactggatgtatctatt
cctgaaactaataatattgcaaagctaattccgaatacaccggggatgaacattgcgaaa
gtgatgaagtccgacttgaagaaattcaagccggaagatcttccgttggtggatgaaata
aaaggaattctgaacaatccggacgatggccgtttcaatgtattggacagtgcttacaaa
atggaaggctgtatccgaaataccggtattcacgcctgtggggtaattattacgccggaa
gatatcagtaatttggttccggtgaccattgcagcaaaagatgcggatattttggtatct
cagtttgacaactcggtagctgaaagtgccggattgctgaaaatggacttcctgggactt
aggacgcttaccattattaaagatgctgttaaactaattaaaaacagacacggaatagaa
attattccggatgatataccactggatgatgccaaaacttatcagctctttaaagaaggc
cgtacgattggtattttccagtatgaatctgctggtatgcaaaaatacatgcgtgagcta
aagcccacagtatttgccgatcttattgccatgaatgcattgtaccgaccgggacctatt
aagtatataccgaactttatcaaccggaagcatggtctggaagaaattatatatgacctg
ccggaaacacaggagtatctacaggaaacctatggaattacggtatatcaggagcaggta
atgctactgtctcagaagctggccaactttaccaaaggtgaggccgatacgctgagaaaa
gcaatgggtaaaaagcagaaagcggtactggataagatgttccctaaatttattgaaggc
gggaagaaaaataacctggacgaagagaaacttcataaaatctggaaagactgggaagcc
tttgcagaatatgcattcaacaagtctcactccacatgttatgcttatatcgcttatcat
actgcttatctgaaagctaattatccggctgaatatatggcgagtgtaatgagtaataac
attaacaataccaagcagattaccctgttcatggaggattgccaggcgatgggtgtagac
gttttggggccttctgttaatgaatctgaatatgaatttgcggtaaacgaaaaagggcag
attcgttttggacttggtgctataaaagggattggggaaggaccatcggaagctatttgt
aaggaaagagaactgggtggtaggtttaccgatatctacagtctttttgaaagaattcct
tcgtcacaactaaataaaagggtagtggaaagtttggtgtttgccggagctttcgacgaa
ttagattcttatcaccgtgcccaatatttcgatgtagatactgcgggaagaaccaatatt
gaacgtttactaaaatacagtaacagtttccaggatagtaaaaactctgtagaaaactct
ttatttgctgatttcgctgatgaggttcagattgaaagaccaaaaataaatccggctccg
gaatggcagaatatgcataaactgaaccgggaaaaagaagccataggtttctatctttcg
gcgcatccgttggatgaattctattatcagtataagtttattcagggagcactgagtaaa
aaatccgtggtaaacaaaaagctggatgaagaactggaaaaagctcctgaaaatgaaaaa
gtagaagagcaggatgataaggatgaagtatctacagatatcgatttccctgttgatata
ttggaggtagacggagatgaaattatcgaagaggttattaaaaaagtggaccctagaggg
aagtttaatttcctgaacctggatgaggtagacccttatagagattttgtgcttcaaaga
gatttttccaatcttacacctgctgaaatttcaaagttaaaagagaaaaaattccggagt
aaaggaaatgataattccaaagaatatatggtttccggtctgattacggagtatgtgata
agggatggttacgaaagcggaacgaagatagcctttattacactggaagattatacaggt
tcatattctttcagactgaatgataaagactacatgcgcctgagagaaaagcttggagag
cataggtttgtgatttttaagatcaaatttgcaccttccaaagactttgacagattatat
gtaaatgttactgaggttattgacctgaaagaagctttcgaccgctatgccaatcagctc
tctttagtagtaccatttaatgaagtagatcaggatgatatagaatttttcagacgtact
tttgcccacaataaaggggtgcataaactaagtttctatctgaaagatccggttgaaaat
cattttgtagaactcaactcaatgcagacctcggtagatataagtgctgaaacaataaag
cttctgcacgagtataagaaatatgagttattcttaaattaa
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