Escherichia coli clone D i14: i14_1269
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Entry
i14_1269 CDS
T02003
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
elc
Escherichia coli clone D i14
Pathway
elc03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
elc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
i14_1269 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
elc03400
]
i14_1269 (mfd)
Enzymes [BR:
elc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
i14_1269 (mfd)
DNA repair and recombination proteins [BR:
elc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
i14_1269 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
MFD_D3
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
UB2H
Cas3-like_C_2
ERCC3_RAD25_C
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
AER88769
LinkDB
All DBs
Position
complement(1276214..1279723)
Genome browser
AA seq
1169 aa
AA seq
DB search
MLIRDMPSYVEAYPNENLTTVMPEQYRYTLPVKAGEQRLLGELTGAACATLVAEIAERHA
GPVVLIAPDMQNALRLHDEISQFTDQMVMNLADWETLPYDSFSPHQDIISSRLSTLYQLP
TMQRGVLIVPVNTLMQRVCPHSFLHGHALVMKKGQRLSRDALRTQLDSAGYRHVDQVMEH
GEYATRGALLDLFPMGSELPYRLDFFDDEIDSLRVFDVDSQRTLEEVEEINLLPAHEFPT
DKAAIELFRSQWRDTFEVKRDPEHIYQQVSKGTLPAGIEYWQPLFFSEPLPPLFSYFPAN
TLLVNTGDLENSAERFQADTLARFENRGVDPMRPLLPPQSLWLRVDELFSELKNWPRVQL
KTEHLPTKAANANLGFQKLPDLAIQAQQKAPLDALRKFLESFDGPVVFSVESEGRREALG
ELLARIKIAPQRIMRLDEASDRGRYLMIGAAEHGFVDTMRNLALICESDLLGERVARRRQ
DSRRAINPDTLIRNLAELHIGQPVVHLEHGVGRYAGMTTLEAGGITGEYLMLTYANDAKL
YVPVSSLHLISRYAGGAEENAPLHKLGGDAWSRARQKAAEKVRDVAAELLDIYAQRAAKE
GFAFKHDREQYQLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAM
RAAFLAVDNHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEV
AEGKIDILIGTHKLLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPI
PRTLNMAMSGMRDLSIIATPPARRLAVKTFVREYDSLVVREAILREILRGGQVYYLYNDV
ENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPT
ANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDL
GAGFALATHDLEIRGAGELLGEEQSGSMETIGFSLYMELLENAVDALKAGREPSLEDLTS
QQTEVDLRMPSLLPDDFIPDVNTRLSFYKRIASAKTENELEEIKVELIDRFGLLPDPART
LLDIARLRQQAQKLGIRKLEGNEKGGVIEFAEKNHVNPAWLIGLLQKQPQHYRLDGPTRL
KFIQDLSERKTRIEWVRQFMRELEENAIA
NT seq
3510 nt
NT seq
+upstream
nt +downstream
nt
ttgcttatcagagatatgccctcatatgttgaggcatatcctaacgagaatctgacaacc
gttatgcctgaacaatatcgttatacgctgcccgtcaaagcgggtgagcagcgtctgctg
ggcgagttaaccggcgctgcctgcgcgacgctggtagcggaaattgccgaacgtcacgcc
ggtccggtggtactcattgcaccagatatgcaaaatgctctgcgtttgcatgatgaaatc
agccagttcaccgatcagatggtgatgaatctggcggactgggaaaccctcccttacgac
agtttttcgcctcatcaggacattatctcctcgcgtctttccaccctttaccagctaccg
accatgcagcgtggcgtactgattgttccggtgaatacgcttatgcagcgcgtttgcccg
cacagctttctccacggtcatgcgctggtgatgaaaaaaggtcagcgcctgtcacgagat
gcattacgaacccaactggacagcgccggttatcgccatgttgaccaggtgatggagcac
ggcgaatacgccacgcgcggcgcgttgctggatctcttcccgatggggagtgagctgcct
tatcgtcttgatttctttgatgatgaaatcgacagcctgcgggtgtttgacgtcgatagc
cagcgcacgctggaggaagtagaagagatcaatctgcttcccgcgcacgaatttcctacc
gataaagcggcaattgaactgttccgcagccagtggcgtgataccttcgaagtgaagcgc
gacccggaacatatttatcagcaagtgagtaaaggcacattacctgccgggatcgagtac
tggcagccgctattcttcagcgaaccgctgccgccactgttcagttatttccctgccaat
acgctgttggtgaatactggcgatctggaaaacagtgccgaacgtttccaggctgacacg
ctggcgcgttttgagaatcgcggcgtcgacccaatgcgcccactgttgccaccacaatcg
ctctggctgcgggtggatgagctcttctcagagctgaaaaactggccccgtgtgcagcta
aaaactgaacatttaccgacaaaagcagcgaatgccaatttaggtttccagaaactgcca
gacctggccattcaggcacaacaaaaagcgccgctggatgcgctgcgtaagttcctcgag
tctttcgacggtccggtggtgttctcggtagaaagtgaaggccgccgtgaagcgttgggt
gaactgctcgcgcgaattaaaattgctccgcaacgcattatgcgtcttgatgaagccagc
gaccgtgggcgttatctgatgattggcgctgccgaacatggttttgtcgatacgatgcgt
aacctggcgctgatttgcgaaagcgatctgctcggtgaacgcgttgcccgtcgtcgtcag
gattctcgccgcgccatcaaccccgatacactgatccgtaaccttgcggagctgcatatt
ggtcagccggtggtccatctggagcacggcgtcggtcgttatgccggaatgaccacgctc
gaagctggaggcattactggcgagtatttgatgctcacctatgccaacgacgccaaactg
tatgttccggtgtcgtcactgcatctgattagccgttacgcgggtggcgcagaagaaaac
gcaccactgcataaacttggtggcgatgcctggtcacgcgcacggcagaaagcggcggaa
aaagtgcgtgatgtggcggcggaattgctggatatctacgcgcaacgcgccgccaaagag
ggcttcgcgtttaaacacgatcgcgagcagtatcagttattctgcgacagcttcccgttt
gaaaccacgccggatcaggcgcaggccattaatgcggtgcttagcgacatgtgtcagccg
ctggcaatggatcgtctggtgtgcggcgatgttggctttggtaaaacagaagtggcgatg
cgcgccgctttcctggcggtagataaccacaaacaggtggcggtgctggtgcctaccacc
cttctcgcgcagcagcattacgacaacttccgcgaccgtttcgccaactggccggtacgt
atcgaaatgatctcccgtttccgcagcgccaaagagcagacgcaaatccttgcggaagtg
gcggaagggaaaatcgatattctgatcggtacgcacaaactgctgcaaagtgacgtcaag
tttaaagatttaggcctgctgattgtcgatgaagaacaccgcttcggggtgcgtcataaa
gagcgcattaaagcgatgcgcgcgaacgtggatattctgacgcttaccgcaacgccgatc
ccacgtacgctgaatatggcaatgagcggaatgcgcgatctgtcgattatcgccacgccg
cccgcccgtcgtctggcagttaaaacctttgtccgtgagtatgacagtctggtggtccgg
gaggcgatcctgcgtgaaattttgcgcggaggacaggtttattatctctacaatgatgtg
gaaaacatccagaaagccgccgaacggctggcagaactggtacctgaagcgcggattgcc
atcggtcacgggcaaatgcgtgagcgcgaactggaacgggtgatgaatgatttccatcat
caacgtttcaacgtgctggtttgtaccaccattatcgaaaccgggatcgacattcctacc
gccaacaccattatcattgaacgcgcggatcacttcggtctggcacagttgcaccagttg
cgcggtcgcgtcgggcgttctcaccaccaggcatatgcatggctactgacgccgcatcca
aaagcgatgactaccgatgcgcaaaaacgtcttgaagcgattgcctcgctggaagatctc
ggtgcaggttttgcgctggcaacgcacgatctggagatccgcggcgcaggtgaactgctt
ggcgaagaacaaagcggctcaatggaaaccatcggtttctcgctgtatatggagttgctg
gaaaacgccgtcgatgcgctgaaagccggacgcgagccgtcgctggaagatctcaccagc
cagcaaacagaagtcgacctgcggatgccgtcgctattgccagatgatttcatccctgac
gtgaacacgcgtctgtcgttctacaaacgtattgccagcgccaaaacggaaaacgaactg
gaagagatcaaagtcgagcttatcgatcgcttcggcctgctgccggatccggcgcgtacc
ctgctggatattgcccgtctgcgccagcaagcgcagaaactggggatcaggaagctggaa
ggtaatgagaaaggcggcgtgatcgaatttgccgagaagaatcacgttaatccagcctgg
ttgattggtttgctgcaaaaacagccgcagcattaccgccttgatggtccgacgcgtctg
aagtttattcaggatttgagcgagcggaaaacgcgtatcgaatgggtacgccagtttatg
cgtgaactggaagagaacgcgatcgcttga
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