Escherichia coli clone D i14: i14_1664
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Entry
i14_1664 CDS
T02003
Symbol
hrpA
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
elc
Escherichia coli clone D i14
Brite
KEGG Orthology (KO) [BR:
elc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
elc03019
]
i14_1664 (hrpA)
Enzymes [BR:
elc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
i14_1664 (hrpA)
Messenger RNA biogenesis [BR:
elc03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
i14_1664 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
DEAD
HA2_N
AAA_19
AAA_22
nSTAND3
T2SSE
NACHT
ResIII
PhoH
AAA_16
AAA_23
NTPase_1
Motif
Other DBs
NCBI-ProteinID:
AER89155
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All DBs
Position
1620596..1624498
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AA seq
1300 aa
AA seq
DB search
MTEQQKLTFTALQQRLDSLMLRDRLRFSRRLHGVKKVKNPDAQQAIFQEMAKEIDHAAGK
VLLREAARPEITYPDNLPVSQKKQDILEAIRDHQVVIVAGETGSGKTTQLPKICMELGRG
IKGLIGHTQPRRLAARTVANRIAEELKTEPGGCIGYKVRFSDHVSDNTMVKLMTDGILLA
EIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKIIITSATIDPERFSRH
FNNAPIIEVSGRTYPVEVRYRPIVEEADDTERDQLQAIFDAVDELSQESPGDILIFMSGE
REIRDTADALNKLNLRHTEILPLYARLSNSEQNRVFQSHSGRRIVLATNVAETSLTVPGI
KYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVSEGICIRLYSEDDFLSR
PEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKRNIQDGVRLLEELGAITTDEQ
ASAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMIITSALSIQDPRERPMDKQQA
SDEKHRRFHDKESDFLAFVNLWNYLGEQQKALSSNAFRRLCRTDYLNYLRVREWQDIYTQ
LRQVVKELGIPVNSEPADYREIHIALLTGLLSHIGMKDADKQEYTGARNARFSIFPGSGL
FKKPPKWVMVAELVETSRLWGRIAARIDPEWVEPVAQHLIKRTYSEPHWERAQGAVMATE
KVTVYGLPIVAARKVNYSQIDPALCRELFIRHALVEGDWQTRHAFFRENLKLRAEVEELE
HKTRRRDILVDDETLFEFYDQRISHDVISARHFDSWWKKVSRETPDLLNFEKSMLIKEGA
EKISKLDYPNFWHQGNLKLRLSYQFEPGADADGVTVHIPLPLLNQVEESGFEWQIPGLRR
ELIIALIKSLPKPVRRNFVPAPNYAEAFLGRVTPLELPLLDSLERELRRMTGVTVDREDW
HWDQVPDHLKITFRVVDDKNKKLKEGRSLQDLKDALKGKVQETLSAVADDGIEQSGLHIW
SFGQLPESYEQKRGNYKVKAWPALVDERDSVAIKLFDNPLEQKQAMWNGLRRLLLLNIPS
PIKYLHEKLPNKAKLGLYFNPYGKVLELIDDCISCGVDQLIDANGGPVWTEEGFAALHEK
VRAELNDTVVDIAKQVEQILTAVFNINKRLKGRVDMTMALGLSDIKAQMGGLVYRGFVTG
NGFKRLGDTLRYLQAIEKRLEKLAIDPHRDRAQMLKVENVQQAWQQWINKLPPARREDED
VKEVRWMIEELRVSYFAQQLGTPYPISDKRILQAMEQISG
NT seq
3903 nt
NT seq
+upstream
nt +downstream
nt
atgacagaacaacaaaaattgacctttactgccttgcagcagcggctggattcgctgatg
ctgcgtgacagactgcgtttttctcgccgtctgcacggcgtgaagaaggttaaaaatcct
gatgcacaacaggccattttccaggagatggcgaaagagattgaccatgcggcagggaaa
gtcctgctgcgtgaagcggcacgaccggagattacttacccggacaatttgccggttagt
cagaaaaagcaggacattctcgaagcgattcgtgaccaccaggtggtgatcgtcgccggg
gaaacgggttccggtaaaacgactcagctaccgaaaatctgtatggagctgggtcgcggg
attaaagggctgatcggccatacccagccgcgtcggctggcggcgcgaacggtggcgaac
cgtattgcggaagagctaaaaacggagccgggcggttgcatcggttacaaagtgcgtttc
agcgatcacgtcagtgataacacgatggtcaagctgatgaccgacggtatcctgctggca
gagatccagcaagaccgcctgctgatgcagtacgacaccatcattattgacgaagcgcac
gaacgcagcctgaatatcgattttctcctcggctatttgaaagagttgctgccgcggcgt
cctgacctaaaaattattatcacctccgcgactatcgacccggaacgcttttcgcgccac
tttaataatgcgccgattatcgaagtctccggtcggacctatccggtggaagtgcgctat
cgcccgattgttgaagaagccgatgacaccgagcgcgaccagttgcaggcgatttttgac
gccgtagatgaactgagccaggaaagccctggcgacattctgatctttatgagcggcgag
cgagaaattcgcgataccgccgatgcgctgaacaagctgaacttacgccataccgaaatc
ttgccgctttatgcacggctttccaacagcgaacagaaccgcgtgttccagtcgcacagc
gggcgacgcattgtactggcgaccaacgtcgcggaaacctcgctgaccgtaccgggtatt
aaatacgttatcgacccaggtacggcgcgtatcagccgctacagctatcgcaccaaagtg
cagcgtttgccgattgagccaatttcgcaggcttcagctaatcagcgtaaaggccgctgc
ggtcgtgtgtcagaagggatctgtattcgtctctattccgaagacgatttcctctcgcgc
ccggagtttaccgacccagaaattctgcgtactaacctggcctcggttattttgcagatg
accgcactgggcttgggcgatatcgccgcattcccgtttgtcgaagcaccggataaacgc
aatatccaggatggcgtgcgtctgctcgaagaactgggtgcgatcaccacggatgaacag
gccagcgcctataaactgacgccgctcggtcgccagctctcgcagttgcctgtcgaccca
cgtctggcgcgtatggtgctggaagcgcaaaaacatggctgcgtgcgtgaggcgatgatt
atcacgtccgcgctctccattcaggacccgcgtgagcgtccgatggataaacagcaggca
tctgacgaaaaacatcgtcgcttccacgacaaagagtctgacttcctggcatttgtgaat
ctgtggaattatcttggcgagcagcaaaaggcgctttcttcaaacgccttccgtcgcctg
tgtcgtactgattatctcaactatctgcgcgtgcgcgaatggcaggatatctacacccag
ttgcgccaggtggtgaaagaacttggcattccggttaacagcgaaccggcggattatcgc
gaaattcacattgcgttgctgaccggtttgctttcgcatatcggcatgaaagatgccgat
aaacaagaatataccggcgcacgtaacgcgcgtttctccatcttccccggttctggttta
ttcaaaaagccgccgaaatgggtaatggtggcggaactggtagaaaccagccgcctgtgg
ggacgcattgctgcgcggatcgacccggaatgggtggagccagttgctcagcatttgatt
aaacgcacctacagcgaaccgcactgggaacgggcgcagggcgcggtgatggcaacggaa
aaagtcactgtttatggtttgccgattgttgctgcgcgtaaggtcaactacagccagatc
gatccggcgttatgtcgtgaactctttattcgccacgcgctggtggaaggtgactggcag
acgcgtcacgcattcttccgtgaaaacctgaaactacgggccgaagtggaagaactggaa
cacaaaactcgtcgccgcgatattctggtggatgacgaaacgctgtttgagttctacgac
cagcgcatcagccacgatgtgatttccgcacgtcacttcgacagctggtggaaaaaagtc
agccgcgaaacgcctgatttgctcaactttgaaaagagcatgttgatcaaagaaggggcg
gaaaaaatcagcaagctggattacccgaacttctggcatcagggcaatctcaagctgcgt
ttgagctatcagtttgagcccggcgcggatgctgacggtgtgaccgtgcatatcccgctg
ccgttacttaaccaggttgaggagagtgggtttgagtggcagatccccggtctgcgtcgt
gagctgatcatcgccctgattaaatcgctgccgaagccggtacgccgtaattttgtgccc
gcgccaaactacgccgaagcgtttttaggccgcgtcacaccgctggaattgccgttgctc
gacagccttgaacgagagttacggcggatgactggcgtcaccgttgaccgcgaagactgg
cactgggatcaggtgcccgatcacctgaaaatcactttccgcgtggtggatgacaaaaac
aagaagctaaaagaagggcgctcattacaggatctgaaagacgccctgaaaggcaaagtg
caggaaacgctgtctgccgtggcggatgacggtatcgagcagagcggtttacatatctgg
agttttggtcaactgccggaaagctacgagcagaagcgcggcaactacaaagtgaaggct
tggccggcgctggtggatgagcgtgacagcgtagcgatcaaactgtttgataacccgctg
gaacagaagcaggcaatgtggaacggtcttcgccgtttactgctgctaaatattccctcg
ccaatcaaatatttgcatgagaagttgccaaacaaagccaagctggggctgtactttaac
ccgtatggcaaagtgctggagctgatcgacgactgtatctcctgcggtgtggatcaactg
atcgacgccaatggtggcccggtctggacggaagaaggctttgctgcgctgcatgaaaaa
gtccgcgctgaactgaacgacacagtggtggatattgcgaagcaggtcgagcaaatcctc
actgcggtgttcaatatcaacaaacgtctgaaagggcgggtggatatgaccatggcgctg
gggctttctgacattaaagcgcagatgggcgggctggtgtatcgcggttttgtcactggt
aacggttttaaacggttgggcgacacgttacggtatttgcaggcgattgaaaaacgactg
gaaaaactggcgattgatccgcatcgtgaccgtgctcagatgctgaaagtcgaaaacgtc
cagcaggcatggcagcaatggatcaacaaactgccgcctgcacgtcgtgaggatgaagac
gtgaaagaggtccgctggatgatagaagagctgcgcgttagttacttcgctcaacaactt
ggcacgccttatccgatttcggataagcgtattttgcaggcgatggagcagattagcggt
taa
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