Escherichia coli clone D i14: i14_3883
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Entry
i14_3883 CDS
T02003
Symbol
ycbS
Name
(GenBank) outer membrane usher protein ycbS precursor
KO
K07347
outer membrane usher protein
Organism
elc
Escherichia coli clone D i14
Pathway
elc02020
Two-component system
Brite
KEGG Orthology (KO) [BR:
elc00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
i14_3883 (ycbS)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
elc02000
]
i14_3883 (ycbS)
02044 Secretion system [BR:
elc02044
]
i14_3883 (ycbS)
02035 Bacterial motility proteins [BR:
elc02035
]
i14_3883 (ycbS)
Transporters [BR:
elc02000
]
Other transporters
Pores ion channels [TC:
1
]
i14_3883 (ycbS)
Secretion system [BR:
elc02044
]
Chaperone-usher system
Type 1 pilus assembly protein
i14_3883 (ycbS)
Bacterial motility proteins [BR:
elc02035
]
Pilus system
Fimbrial proteins
i14_3883 (ycbS)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Usher
PapC_N
PapC_C
Motif
Other DBs
NCBI-ProteinID:
AER91332
LinkDB
All DBs
Position
complement(3866493..3869087)
Genome browser
AA seq
864 aa
AA seq
DB search
MNLKLKRCEYWMAAQKQMKRVVPLLLVIMPACSIAGMRFNPAFLSGDTEAVADLSRFEKG
MTYLPGSYEVEVWVNDSPLLSRTVTFKADDENQLIPCLSLADLLSLGINKNALPEQALAS
SENSCLDLRIWFPDVHYMPELDAQRLKLTFPQAIIKRDARGYIPPEQWDNGITAFLLNYD
FSGNNDRGDYSSNNYYLNLRAGINIGAWRFRDYSTWSRGSNSAGKLEHISSTLQRVIIPF
RSELTLGDTWSSSDVFDSVSIRGIKLESDENMLPDSQSGFAPTVRGIAKSRAQVTIKQNG
YVIYQTYMPPGPFEISDLNPTSSAGDLEVTIKESDNSETVYTVPYAAVPILQREGHLKYS
TTVGQYRSNSYNQKSPYVFQGELIWGLPWDITAYGGAQFSEDYRALALGLGLNLGVFGAT
SFDVTQANSSLVDGSKHQGQSYRFLYSKSLVQTGTAFHIIGYRYSTQGFYTLSDTTYQQM
SGTVVDPKTLDDKDYVYNWNDFYNLRYSKRGKFQASVSQPFGNYGSMYLSASQQTYWNTD
KKDSLYQVGYNTSIKGIYLNVAWNYSKSPGTNADKIVSLNVSLPISNWLSSTNDGRSSSN
AMTATYGYSQDNHGQVNQYTGVSGSLLEQHNLSYNIQHGFANQDNSSSGSVGVNYRGAYG
SLNSAYSYDNEGNQQINYGISGALVVHENGLTLSQPLGETNVLIKAPGANNVDVQRGTGI
STDWRGYAVVPYATEYRRNNISLDPMSMNMHTELDITSTEVIPGKGALVRAEFAAHIGIR
GLFTVRYRNKSVPFGATASAQIKNSSQITGIVGDNGQLYLSGLPLEGVINIQWGDGVQQK
CQANYKLPETELDNPVSYATLECR
NT seq
2595 nt
NT seq
+upstream
nt +downstream
nt
atgaacctaaagctcaaaagatgcgaatattggatggcggcacaaaagcagatgaaacgg
gttgtgccgcttcttctggttattatgcctgcatgttcaatcgcgggaatgcgctttaac
cctgcttttctgtcgggtgatactgaagctgttgctgacttatcccgcttcgagaaaggg
atgacttatcttcctggtagctatgaagtcgaagtttgggtcaatgattcccctttactc
tctcgtactgtaacttttaaagcagacgatgagaatcaactgattccctgcctttcactt
gctgacttattaagccttggaattaacaaaaatgcgctgccagagcaggctttggcttca
tctgaaaatagttgccttgatttgcgtatctggtttcccgatgtgcattacatgccggag
ctggatgcacagagacttaaactgacctttccacaggcgataataaaacgtgacgctcgc
ggatatattccaccagaacagtgggataacggtattacagcttttttgctgaattatgac
ttttctggtaataacgatcgtggtgattactcttcaaataactattatttaaatcttcgc
gctgggatcaatattggtgcatggcgttttcgcgattattcaacctggagtcgtgggagt
aattcagcaggtaaactggagcatatcagtagtacgttgcagcgcgttattattcctttc
agaagtgaattaacgctaggagatacatggtcatcatcagatgttttcgacagtgttagt
attcgtggcataaaactggaatctgacgaaaatatgttgcccgatagtcaaagtggtttc
gctcccacggtgcgcggaattgcgaaaagtcgcgctcaggtaacaatcaaacagaatggt
tatgtcatttatcaaacctatatgccgccgggaccgtttgagattagcgatcttaacccg
acatcatctgcgggagatctggaagttaccatcaaagagtctgataattcagaaactgtc
tataccgtaccttatgccgctgtccccatcctgcaacgagaaggtcatttaaaatattct
actacggttggccaatatcgaagcaatagctataaccagaaaagtccttatgtatttcag
ggggaattaatttggggtttaccctgggatattacggcttatggtggggcacaattctct
gaggattaccgggcgttggcgctcggccttggcctgaatctgggtgtatttggtgcaaca
tcgtttgatgttactcaggctaacagttcgcttgtggatgggagcaaacatcaagggcaa
tcttatcgttttctttattccaaatcgttagttcagacaggaacagcattccatattatt
ggctatcgttattcaacccagggcttttacactttaagtgatacgacataccaacaaatg
tcagggactgttgttgatccaaaaacgttagatgataaagattacgtttataactggaat
gatttttataacttgcgttatagcaaacgtggaaaatttcaggctagtgtatcgcaacct
ttcggtaactacgggtctatgtatttatcggctagtcagcaaacatactggaatactgat
aaaaaagattctttataccaagttggttataacaccagtattaagggtatctatctaaat
gttgcgtggaattacagtaaatcaccagggacaaatgcggataaaattgtctcgctaaat
gtctcattacctataagtaattggttatcttccacgaatgatgggcgctcatcatcgaat
gccatgactgcaacgtatggttatagtcaggataaccacggacaggtaaaccaatatacg
ggggtatctggttctctgttggagcagcataatctcagttataacatacaacatggtttt
gctaatcaggataatagcagtagtggttctgttggtgttaattatcgtggggcatatggt
tccttgaattccgcctacagttacgataatgaaggtaatcaacaaataaactatggcatc
agtggtgctcttgttgtacatgaaaatggtcttacgttgagtcaaccattaggtgaaact
aatgttttgataaaagcgcctggagcgaataatgtggatgttcagcgggggacaggaata
tccactgactggcgtggatatgcagttgttccttatgcaacagaatatagacgtaataat
atttcattagatcctatgtcaatgaatatgcatactgaactggatatcacttccactgaa
gttattccgggaaaaggtgcgttagttcgtgcagagtttgctgctcatatcggtattcgt
ggtttgttcacagttcgttatcgtaataaatcagtcccattcggtgctacagccagcgct
cagattaaaaacagtagtcaaattaccgggattgtcggcgataatggacaactttatctc
tcaggattgcctttagaaggtgttattaatatccagtggggagacggtgttcagcaaaaa
tgtcaggctaattacaagctccctgaaacagaactggataatcctgttagctatgcaact
ctggagtgccgctaa
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