Escherichia coli clone D i2: i02_2146
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Entry
i02_2146 CDS
T02004
Symbol
sdiA
Name
(GenBank) DNA-binding transcriptional activator SdiA
KO
K07782
LuxR family transcriptional regulator, quorum-sensing system regulator SdiA
Organism
eld
Escherichia coli clone D i2
Pathway
eld02020
Two-component system
eld02024
Quorum sensing
eld02026
Biofilm formation - Escherichia coli
Brite
KEGG Orthology (KO) [BR:
eld00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
i02_2146 (sdiA)
09140 Cellular Processes
09145 Cellular community - prokaryotes
02024 Quorum sensing
i02_2146 (sdiA)
02026 Biofilm formation - Escherichia coli
i02_2146 (sdiA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
eld03000
]
i02_2146 (sdiA)
Transcription factors [BR:
eld03000
]
Prokaryotic type
Helix-turn-helix
LuxR family
i02_2146 (sdiA)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Autoind_bind
GerE
Sigma70_r4_2
HTH_20
Sigma70_r4
HTH_10
DUF722
HTH_23
Motif
Other DBs
NCBI-ProteinID:
AER84713
LinkDB
All DBs
Position
complement(2087234..2087956)
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AA seq
240 aa
AA seq
DB search
MQDTDFFSWLRTMLLRFQRMEAAEEVYHEIELQAQQLEYDYYSLCVRHPVPFTRPKVAFY
TNYPESWVSYYQAKNFLAIDPVLNPENFSQGHLMWNDDLFSEAQPLWEAARAHGLRRGVT
QYLMLPNRALGFLSFSRCSTREIPILSDELQLKMQLLVRESLMALMRLNDEIVMTPEMNF
SKREKEILKWTAEGKTSAEIAMILSISENTVNFHQKNMQKKINAPNKTQVACYAAATGLI
NT seq
723 nt
NT seq
+upstream
nt +downstream
nt
atgcaggatacggattttttcagctggcttcgcacgatgttgttgcgttttcagaggatg
gaggccgcagaagaggtctaccatgaaatagagcttcaggctcagcagctggagtacgat
tactattcgttatgtgttcgccacccggtaccattcacgcgacctaaagtggctttctac
accaattaccctgagtcgtgggttagttattatcaggcaaaaaattttctcgcaattgat
ccggtgctgaaccctgaaaactttagtcagggccatttaatgtggaatgatgacttattc
agcgaagcacagccgttatgggaagctgcgcgcgcacatggtttacgccgcggtgtcact
cagtatttaatgctgccaaatcgggcgttgggctttttgtccttttcccgttgcagcacg
cgcgaaatacccattcttagtgatgaactgcaattaaaaatgcagctactggtgcgcgaa
agtctgatggctctgatgcgtttaaatgatgaaatagtgatgacgccagagatgaatttc
agcaagcgcgaaaaagaaattctgaaatggacggcggaaggtaagacatcagcagagata
gcgatgattttgtcaatctctgagaatacggtcaatttccatcagaaaaacatgcagaaa
aaaatcaatgcaccgaataagacgcaggttgcctgttacgcggccgctactggcttaatt
tga
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