Escherichia coli clone D i2: i02_3606
Help
Entry
i02_3606 CDS
T02004
Symbol
deaD
Name
(GenBank) ATP-dependent RNA helicase DeaD
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
eld
Escherichia coli clone D i2
Pathway
eld03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
eld00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
i02_3606 (deaD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
eld03019
]
i02_3606 (deaD)
03009 Ribosome biogenesis [BR:
eld03009
]
i02_3606 (deaD)
Enzymes [BR:
eld01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
i02_3606 (deaD)
Messenger RNA biogenesis [BR:
eld03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
i02_3606 (deaD)
Ribosome biogenesis [BR:
eld03009
]
Prokaryotic type
rRNA helicases
i02_3606 (deaD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
DeaD_dimer
DeaD_C
ResIII
CMS1
AAA_22
Cas3-like_C_2
DRTGG
Motif
Other DBs
NCBI-ProteinID:
AER86140
LinkDB
All DBs
Position
complement(3610418..3612358)
Genome browser
AA seq
646 aa
AA seq
DB search
MMSYVDWPPLILRHTYYMAEFETTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNG
RDVLGMAQTGSGKTAAFSLPLLQNLDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRG
VNVVALYGGQRYDVQLRALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLR
MGFIEDVETIMAQIPEGHQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQS
YWTVWGMRKNEALVRFLEAEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQAL
REQTLERLKDGRLDILIATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAG
RALLFVENRERRLLRNIERTMKLTIPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQY
RALLSKIQPTAEGEELDLETLAAALLKMAQGERTLIVPPDAPMRPKREFRDRDDRGPRDR
NDRGPRGDREDRPRRERRDVGDMQLYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIK
LFASHSTIELPKGMPGEVLQHFTRTRILNKPMNMQLLGDAQPHTGGERRGGGRGFGGERR
EGGRNFSGERREGGRGDGRRFSGERREGRAPRRDDSTGRRRFGGDA
NT seq
1941 nt
NT seq
+upstream
nt +downstream
nt
atgatgagttatgtagactggccgccattaattttgaggcacacgtactacatggctgaa
ttcgaaaccacttttgcagatctgggcctgaaggctcctatccttgaagcccttaacgat
ctgggttacgaaaaaccatctccaattcaggcagagtgtattccacatctgctgaatggc
cgcgacgttctgggtatggcccagacggggagcggaaaaactgcagcattctctctacct
ctgctgcagaatcttgatcctgagctgaaagcaccacagattctggtgctggcaccgacc
cgcgaactggcggtacaggttgctgaagcaatgacggatttctctaaacacatgcgcggc
gtaaacgtggttgccctgtacggcggccaacgttatgacgtgcaattacgcgccctgcgt
caggggccgcagatcgttgtcggtactccgggccgtctgctggaccacctgaaacgtggc
actctggacctctctaaactgagcggtctggttctggatgaagctgacgaaatgctgcgc
atgggcttcatcgaagacgttgaaaccattatggcgcagatcccggaaggtcatcagacc
gctctgttctctgcaaccatgccggaagcgattcgtcgcattacccgccgctttatgaaa
gagccgcaggaagtgcgcattcagtccagcgtgactacccgtcctgacatcagccagagc
tactggactgtctggggtatgcgtaaaaacgaagcactggtacgtttcctggaagcggaa
gattttgatgcggcgattatcttcgttcgtaccaaaaacgcgactctggaagtggcagaa
gctcttgagcgtaacggctacaacagcgccgcgctgaacggtgacatgaaccaggcgctg
cgtgagcagacactggaacgcctgaaagatggtcgtctggacatcctgattgcgaccgac
gttgcagcccgtggcctggacgttgagcgtatcagcctggtggttaactacgatatcccg
atggattctgagtcttacgttcaccgtatcggtcgtaccggtcgtgcaggtcgtgctggt
cgtgcactgctgttcgttgagaaccgtgagcgtcgtctgctgcgtaacattgaacgcacc
atgaagctgaccattccggaagtagaactgccgaacgcagaactgctgggcaaacgtcgt
ctggaaaaatttgccgctaaagtacagcagcagctggaaagcagcgatctggatcaatac
cgtgcactgctgagcaaaattcagccgactgccgaaggtgaagagctggatctcgaaact
ctggcagccgcactactgaaaatggcacagggtgaacgtactctgattgttccgccagat
gcgccgatgcgtccgaaacgtgaattccgtgaccgtgatgaccgtggtccgcgcgatcgt
aacgaccgtggcccgcgtggcgaccgtgaagatcgtccgcgtcgcgaacgtcgtgatgtt
ggcgatatgcagttgtaccgtattgaagtgggccgcgatgatggtgttgaagttcgtcat
atcgttggtgcgattgctaacgaaggcgacatcagcagccgttacatcggtaacatcaag
ctgtttgcttctcactccaccatcgaactgccgaaaggtatgccgggtgaagtgctgcaa
cactttacgcgtactcgcattctcaacaagccgatgaacatgcagttactgggcgatgca
cagccgcatactggcggtgagcgtcgtggcggtggtcgtggtttcggtggcgaacgtcgt
gaaggcggtcgtaacttcagcggtgaacgccgtgaaggggggcgtggtgatgggcgtcgt
tttagcggcgaacgtcgtgaaggccgcgcaccgcgtcgtgatgactctaccggtcgtcgt
cgtttcggtggtgatgcgtaa
DBGET
integrated database retrieval system
