Escherichia coli clone D i2: i02_3869
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Entry
i02_3869 CDS
T02004
Symbol
rtcB
Name
(GenBank) protein rtcB
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
eld
Escherichia coli clone D i2
Brite
KEGG Orthology (KO) [BR:
eld00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
eld03016
]
i02_3869 (rtcB)
Enzymes [BR:
eld01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
i02_3869 (rtcB)
Transfer RNA biogenesis [BR:
eld03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
i02_3869 (rtcB)
Prokaryotic type
tRNA splicing ligases
i02_3869 (rtcB)
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Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
DUF4514
Motif
Other DBs
NCBI-ProteinID:
AER86400
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All DBs
Position
complement(3854534..3855823)
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AA seq
429 aa
AA seq
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MIFWHDGCNYQDSKQRKEKNKMNYELLTTENAPVKMWTKGVPVEADARQQLINTAKMPFI
FKHIAVMPDVHLGKGSTIGSVIPTKGAIIPAAVGVDIGCGMNALRTALTAADLPENLAEL
RQAIETAVPHGRTTGRCKRDKGAWENPPVNVDAKWAELEAGYQWLTQKYPRFLNTNNYKH
LGTLGTGNHFIEICLDESDQVWIMLHSGSRGIGNAIGTYFIDLAQKEMQETLETLPSRDL
AYFMEGTEYFDDYLKAVAWAQLFASLNRDAMMENVVTALQSVMQKTVKQPQTLAMEEINC
HHNYVQKELHFGEEIYVTRKGAVSARAGQYGIIPGSMGAKSFIVRGLGNEESFCSCSHGA
GRVMSRTKAKKLFSVEDQIRATAHVECRKDAEVIDEIPMAYKDIDAVMAAQSDLVEVIYT
LRQVVCVKG
NT seq
1290 nt
NT seq
+upstream
nt +downstream
nt
ttgattttctggcacgacggttgcaattatcaggacagcaaacaacgaaaagagaaaaac
aaaatgaattacgaattactgaccactgaaaatgctccggtaaaaatgtggaccaaaggc
gtgccggtagaagccgatgcgcgtcagcaacttattaataccgcgaagatgccatttatt
ttcaaacatattgcggtaatgcctgatgtacacctgggtaaaggttccaccattggtagc
gtgatcccgaccaaaggggcgattattccggcggcggtgggcgtggatattggctgtgga
atgaacgcactgcgtaccgcgttaacggcggcggacctgcctgaaaacctggcagagctg
cgtcaggcgattgaaacggccgtaccgcacggacgtactaccgggcgttgtaaacgtgat
aaaggcgcatgggaaaatccgcctgttaacgtcgatgcgaaatgggctgagctggaggcc
ggttatcagtggttaacgcaaaaatatccgcgtttccttaacactaataactataaacac
ctgggaacgctgggtacgggtaaccactttattgaaatttgccttgatgagtcggatcag
gtgtggattatgctgcactccggttcacgcggaattggtaacgccatcggaacttatttt
atcgatctggcgcaaaaagagatgcaggaaacgcttgaaacgttgccatcgcgtgacctg
gcgtactttatggaaggtacggaatactttgatgattacctgaaagccgtggcctgggcg
cagctttttgccagccttaaccgcgatgcgatgatggaaaacgtggtaacggcgttgcag
agcgttatgcagaaaacggtaaaacagccacaaacgctggcgatggaagagatcaactgt
caccacaactatgtgcaaaaagaactgcactttggcgaagagatctatgtgacgcgtaaa
ggcgcggtgtctgcgcgtgctggtcaatatggaattattcccggttcgatgggggcgaaa
agctttatcgtccgtgggctgggaaatgaagagtcgttctgttcgtgcagccacggtgcc
gggcgggtaatgagccgtactaaagcgaaaaaactgttcagtgtggaagatcaaatccgt
gccaccgcgcatgtggagtgccgtaaagatgccgaggtgatcgacgaaatcccgatggcg
tataaagatattgatgcggtgatggcggcacaaagcgatctggtggaagttatctatacc
ctgcgtcaggtggtgtgcgtaaaaggataa
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