Escherichia coli clone D i2: i02_4295
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Entry
i02_4295 CDS
T02004
Symbol
rho
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
eld
Escherichia coli clone D i2
Pathway
eld03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
eld00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
i02_4295 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
eld03021
]
i02_4295 (rho)
03019 Messenger RNA biogenesis [BR:
eld03019
]
i02_4295 (rho)
Transcription machinery [BR:
eld03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
i02_4295 (rho)
Messenger RNA biogenesis [BR:
eld03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
i02_4295 (rho)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
NACHT
OB_RNB
AAA_22
AAA_25
S1CSD-TOTE-2
AAA
FtsK_SpoIIIE
Motif
Other DBs
NCBI-ProteinID:
AER86816
LinkDB
All DBs
Position
4288435..4289766
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AA seq
443 aa
AA seq
DB search
MDDPAIPFTTLSSRFTPSLRTHTTMNLTELKNTPVSELITLGENMGLENLARMRKQDIIF
AILKQHAKSGEDIFGDGVLEILQDGFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDT
ISGKIRPPKEGERYFALLKVNEVNFDKPENARNKILFENLTPLHANSRLRMERGNGSTED
LTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEV
TEMQRLVKGEVVASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNT
VVPASGKVLTGGVDANALHRPKRFFGAARNVEEGGSLTIIATALIDTGSKMDEVIYEEFK
GTGNMELHLSRKIAEKRVFPAIDYNRSGTRKEELLTTQEELQKMWILRKIIHPMGEIDAM
EFLINKLAMTKTNDDFFEMMKRS
NT seq
1332 nt
NT seq
+upstream
nt +downstream
nt
atggatgatcctgccataccattcacaacattaagttcgagatttaccccaagtttaaga
actcacaccactatgaatcttaccgaattaaagaatacgccggtttctgagctgatcact
ctcggcgaaaatatggggctggaaaacctggctcgtatgcgtaagcaggacattattttt
gccatcctgaagcagcacgcaaagagtggcgaagatatctttggtgatggcgtactggag
atattgcaggatggatttggtttcctccgttccgcagacagctcctacctcgccggtcct
gatgacatctacgtttcccctagccaaatccgccgtttcaacctccgcactggtgatacc
atctctggtaagattcgcccgccgaaagaaggtgaacgctattttgcgctgctgaaagtt
aacgaagttaacttcgacaaacctgaaaacgcccgcaacaaaatcctctttgagaactta
accccgctgcacgcaaactctcgtctgcgtatggaacgtggtaacggttctacggaagat
ttaaccgctcgcgtactggatctggcatcacctatcggtcgtggtcagcgtggtctgatt
gtggcaccgccgaaagccggtaaaaccatgctgctgcagaacattgctcagagcattgct
tacaaccacccggattgtgtgctgatggttctgctgatcgacgaacgtccggaagaagta
accgagatgcagcgtctggtaaaaggtgaagttgttgcttctacctttgacgaacccgca
tctcgccacgttcaggttgcggaaatggtgatcgagaaggcgaaacgcctggttgagcac
aagaaagacgttatcattctgctcgactccatcactcgtctggcgcgcgcttacaacacc
gttgttccggcgtcaggtaaagtgttgaccggtggtgtggacgccaacgccctgcatcgt
ccgaaacgcttcttcggtgcggcgcgtaacgtggaagagggcggcagcctgaccattatc
gcgacggcgcttatcgataccggttctaaaatggacgaagttatctacgaagagtttaaa
ggtacaggcaacatggaactgcacctctctcgtaagatcgctgaaaaacgcgtcttcccg
gctatcgactacaaccgttccggtacccgtaaagaagagctgctcacgactcaggaagaa
ctgcagaaaatgtggatcctgcgcaaaatcattcacccgatgggcgaaatcgatgcaatg
gaattcctcattaataaactggcaatgaccaagaccaatgacgatttcttcgaaatgatg
aaacgctcataa
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