Escherichia coli clone D i2: i02_4771
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Entry
i02_4771 CDS
T02004
Symbol
vacB
Name
(GenBank) exoribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
eld
Escherichia coli clone D i2
Pathway
eld03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
eld00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
i02_4771 (vacB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
eld03019
]
i02_4771 (vacB)
03016 Transfer RNA biogenesis [BR:
eld03016
]
i02_4771 (vacB)
Enzymes [BR:
eld01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
i02_4771 (vacB)
Messenger RNA biogenesis [BR:
eld03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
i02_4771 (vacB)
Transfer RNA biogenesis [BR:
eld03016
]
Prokaryotic type
tRNA degradation factors
i02_4771 (vacB)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
WHD_RNase_R
RNase_II_C_S1
Rho_RNA_bind
Motif
Other DBs
NCBI-ProteinID:
AER87282
LinkDB
All DBs
Position
4784427..4786910
Genome browser
AA seq
827 aa
AA seq
DB search
MTKIFIRDDNGGTEMSQDPFQEREAEKYANPIPSREFILEHLTKREKPASRDELAAELHI
EGEEQLEGLRRRLRAMERDGQLVFTRRQCYALPERLDLVKGIVIGHRDGYGFLRVEGRKD
DLYLSSEQMKTCIHGDQVLAQPLGADRKGRREARIVRVLVPKTSQIVGRYFTEAGVGFVV
PDDSRLSFDILIPPDQIMGARMGFVVVVELTQRPTRRTKAVGKIVEVLGDNMGTGMAVDI
ALRTHEIPYIWPQAVEQQVAGLKEEVPEEAKVGRVDLRDLPLVTIDGEDARDFDDAVYCE
KKRGGGWRLWVAIADVSYYVRPPTPLDREARNRGTSVYFPSQVIPMLPEVLSNGLCSLNP
QVDRLCMVCEMTVSSKGRLTGYKFYEAVMSSHARLTYTKVWHILQGDQDLREQYAPLVKH
LEELHNLYKVLDKAREERGGISFESEEAKFIFNAERRIERIEQTQRNDAHKLIEECMILA
NISAARFVEKAKEPALFRIHDKPSTEAITSFRSVLAELGLELPGGNKPEPRDYAELLESV
ADRPDAEMLQTMLLRSMKQAIYDPENRGHFGLALQSYAHFTSPIRRYPDLTLHRAIKYLL
AKEQGHQGNTTETGGYHYSMEEMLQLGQHCSMAERRADEATRDVSDWLKCDFMLDQVGNV
FKGVISSVTGFGFFVRLDDLFIDGLVHVSSLDNDYYRFDQVGQRLMGESSGQTYRLGDRV
EVRVEAVNMDERKIDFSLISSERAPRNVGKTAREKAKKGDAGKKGGKRRQVGKKVNFEPD
SAFRGEKKPKPKAAKKDARKAKKPSAKTQKIAAATKAKRAAKKKVAE
NT seq
2484 nt
NT seq
+upstream
nt +downstream
nt
gtgacgaaaatcttcatcagagatgacaacggaggaaccgagatgtcacaagatcctttc
caggaacgcgaagctgaaaaatacgcgaatcccatccctagtcgggaatttatcctcgaa
catttaaccaaacgtgaaaaaccggccagccgtgatgagctggcggcagaactgcacatt
gaaggcgaagagcagcttgaaggcctgcgtcgccgcctgcgcgcgatggagcgcgatggt
caactggtcttcactcgccgtcagtgctatgcgctgccggaacgcctcgacctggtgaaa
ggtatcgttattggccaccgtgatggctacggctttctgcgagttgaagggcgtaaagat
gatttgtatctctccagcgagcagatgaaaacctgcattcatggcgatcaggtgctggct
cagccgctgggcgctgaccgtaaaggtcgtcgtgaagcgcgtattgtccgcgtactggtg
ccaaaaaccagccagattgttggtcgctacttcaccgaagcgggcgtcggctttgtggtt
cctgacgatagccgtctgagcttcgatatcttaatcccgcccgatcagatcatgggcgcg
cggatgggctttgtggtggtggttgaactgactcaacgcccgactcgccgtaccaaagcg
gtgggtaaaatcgtcgaagtgctgggcgacaatatgggcaccggcatggcggttgatatc
gctctgcgtacccatgaaattccgtacatctggccgcaggctgttgagcaacaggttgcc
gggctgaaagaagaagtgccggaagaagcaaaagtgggccgtgtcgatctgcgcgattta
ccgctggtcaccattgatggcgaagacgcccgtgactttgacgatgcagtttactgtgag
aaaaaacgcggcggcggctggcgtttatgggtcgcgattgccgacgtcagctactatgtg
cgtccgccaacgccgctggacagagaagcgcgtaatcgtggtacgtcggtgtacttccct
tcgcaggttatcccgatgctgccagaagtgctctctaacggcctgtgttcgctcaacccg
caggtagaccgcctgtgtatggtgtgcgagatgacggtttcgtcgaaaggccgcctgact
ggctacaaattctacgaagcggtgatgagctctcacgcgcgtctgacctacaccaaagtc
tggcatattctgcagggcgatcaggatctgcgcgagcagtacgccccgctggttaagcat
ctcgaagagttgcataacctctataaagtgctggataaagcccgtgaagaacgcggcggg
atctcatttgagagcgaagaagcgaagttcattttcaacgctgaacgccgtattgaacgt
atcgaacagactcagcgtaacgacgcccacaagttaattgaagagtgcatgattctggcg
aatatctcggcggcgcgtttcgttgagaaagcgaaagaaccggcactgttccgtattcac
gacaagccgagcaccgaagcaattacctctttccgttcagtgctggcggagctggggctg
gaattgccgggcggtaacaagccggaaccgcgtgactacgcggagctgctagagtcggtt
gccgatcgtcctgacgcagaaatgctgcaaaccatgctgctgcgctcgatgaaacaggcg
atttacgatccggaaaaccgtggccacttcggtctggcattgcagtcctatgcgcacttt
acttcgccgattcgtcgttatcctgacctgacgctgcaccgcgccattaaatatctgctg
gcgaaagagcaggggcatcagggcaacaccactgaaaccggcggctaccattattcgatg
gaagagatgctgcaactgggtcagcactgttcgatggcggaacgtcgtgccgatgaagca
acgcgcgatgtgtctgactggctgaagtgtgacttcatgctcgaccaggtaggtaacgtc
tttaaaggcgtaatttccagcgtcactggctttggcttcttcgtccgtctggacgacttg
ttcattgatggtctggtccatgtctcttcgctggacaatgactactatcgctttgaccag
gtagggcaacgcctgatgggtgaatccagcggccagacttatcgcctgggtgatcgcgtg
gaagttcgcgtcgaagcggttaatatggacgagcgcaaaatcgactttagcctgatctcc
agcgaacgcgcaccgcgcaacgtcggtaaaacggcgcgcgagaaagcgaaaaaaggcgat
gcaggcaaaaaaggcggcaagcgtcgtcaggtcggcaaaaaggtcaactttgagccagac
agcgccttccgcggcgagaaaaaaccgaagccgaaagcagcgaagaaagacgcgagaaaa
gcgaaaaagccatcggcgaaaacgcagaaaatagccgcagcgaccaaagcgaagcgtgcg
gcgaagaaaaaagtggcagagtga
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