Escherichia coli LF82: LF82_0381
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Entry
LF82_0381 CDS
T00854
Symbol
csrD
Name
(GenBank) Uncharacterized protein yhdA
KO
K18765
RNase E specificity factor CsrD
Organism
elf
Escherichia coli LF82
Brite
KEGG Orthology (KO) [BR:
elf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
elf03019
]
LF82_0381 (csrD)
Messenger RNA biogenesis [BR:
elf03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
LF82_0381 (csrD)
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
EAL
GAPES4
GGDEF
GDPD
Motif
Other DBs
NCBI-ProteinID:
CAP77704
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All DBs
Position
complement(3436079..3438019)
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AA seq
646 aa
AA seq
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MRLTTKFSAFVTLLTGLTIFVTLLGCSLSFYNAIQYKFSHRVQAVATAIDTHLVSNDFST
LRPQITELMMSADIVRVDLLHGDKQVYTLARNGSYRPVGTNDLFRELSVPLIKHPGMSLR
LVYQDPMGNYFHSLMTTAPLTGAIGFIILMLFLAVRWLQRQLAGQELLETRATRILNGER
GSNVLGTIYEWPPRTSSALDTLLCEIQNAREQHSRLDTLIRSYAAQDMKTGLNNRLFFDN
QLATLLEDQEKVGTHGIVMMIRLPDFNMLSDTWGHSQVEEQFFSLTNLLSTFMMRYPGAL
LARYHRSDFAALLPHRTLKEAESIASQLIKAVDTLPNNKMLDRDDMIHIGICAWRSGQDT
EQVMEHAESATRNAGLQGGNSWAIYDDSLPEKGRGNVRWRTLIEQMLSRGGPRLYQKPAV
TREGQVHHRELMCRIFDGNEEVSSAEYMPMVLQFGLSEEYDRLQISRLIPLLRYWPEENL
AIQVTVESLIRPRFQRWLRDTLMQCEKSQRRRIIIELAEADVGQHISRLQPVIRLVNALG
VRVAVNQAGLTLVSTSWIKELNVELLKLHPGLVRNIEKRTENQLLVQSLVEACSGTSTQV
YATGVRSRSEWQTLIQRGVTGGQGDFFASSQPLDTNVKKYSQRYSV
NT seq
1941 nt
NT seq
+upstream
nt +downstream
nt
atgagattaacgacgaaattttcggcctttgtcacgctgctcaccgggttaacaattttt
gtgactttgctgggctgttcgctaagtttctacaacgccattcagtataagtttagtcat
cgtgttcaggcggtggcgacggcgattgatacccacctagtgtcgaatgacttcagcaca
ttaaggccacaaattaccgaattaatgatgtcggcagatatcgttcgtgtagacctgctc
catggtgataagcaggtttataccctggccagaaatggtagttatcgtccggttggcacc
aacgatctgtttcgtgaactgagcgttccgttgataaagcatccggggatgtcgctgcgt
ctggtttatcaggatccgatgggcaactatttccattctttaatgactaccgcgccgctc
acgggggcgattggctttatcattcttatgctcttcctggcggtacgctggttacaacgg
caacttgccgggcaagaattgctggaaacccgggctactcgtatcttaaacggtgagcgt
ggctctaatgtgttgggaaccatctatgaatggccgcccagaaccagcagtgcgctggat
acgctgctttgtgaaattcagaacgcacgcgaacaacacagccgtcttgatacgctgatc
cgctcttatgccgcccaggacatgaaaaccggcctcaataaccgactctttttcgataat
cagttagcaacgttactggaagatcaagagaaagttggtacccacgggatcgtgatgatg
attcgtctgccggatttcaatatgttgagtgatacctgggggcacagccaggttgaagaa
cagttcttctctctgacgaatctgctatcgacatttatgatgcgctaccctggcgcactg
ctggcgcgttaccaccgcagtgattttgctgcgctgttaccgcaccggacgttaaaagag
gcagagagcatcgccagtcagttaatcaaagccgtcgataccttgccgaacaataaaatg
ctcgatcgcgacgatatgatccacattggtatctgtgcctggcgtagtggtcaggatacc
gagcaggtaatggaacatgcagagtctgccacgcgtaatgcgggattgcagggcggcaat
agctgggctatttacgatgactcgttgcctgaaaaaggacgcggtaatgttcgctggcgt
acgcttatcgagcaaatgctcagtcgcggcggcccgcgcctttatcaaaaaccggcggtt
actcgcgaaggccaggttcatcatcgtgaactcatgtgccgcatcttcgatggtaatgaa
gaggttagctcggcagagtatatgccgatggtcttgcagtttggtttatcggaagagtat
gaccgcctgcaaatcagccgtcttattccactattgcgttactggccagaggaaaatctg
gcgattcaggttaccgttgagtcgctgattcgcccgcgttttcagcgttggctgcgcgat
acgttaatgcaatgtgaaaaatcgcaacgaagacgcataattattgaacttgcagaggcc
gatgttggtcaacatatcagtcgcttacaacctgttattcgtttagtgaatgctttaggg
gtacgggtagccgtcaaccaggctggtttgacgctggtaagcaccagttggatcaaagaa
cttaatgttgagttactcaagctccatccggggctagtcagaaacattgagaagcgaacg
gagaaccagctgctggttcaaagcctggtggaagcctgctccgggaccagcacccaggtt
tacgccaccggcgtacgttcgcgaagcgagtggcagaccctgattcagcgcggtgttaca
ggtgggcaaggggattttttcgcgtcctcacagccacttgatactaacgtgaaaaaatat
tcacaaagatactcggtttaa
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