Escherichia coli LF82: LF82_1906
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Entry
LF82_1906 CDS
T00854
Symbol
rnb
Name
(GenBank) exoribonuclease 2
KO
K01147
exoribonuclease II [EC:
3.1.13.1
]
Organism
elf
Escherichia coli LF82
Brite
KEGG Orthology (KO) [BR:
elf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
elf03016
]
LF82_1906 (rnb)
Enzymes [BR:
elf01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
LF82_1906 (rnb)
Transfer RNA biogenesis [BR:
elf03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
LF82_1906 (rnb)
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
OB_RNB
S1
CSD2
OSR1_C
S1CSD-TOTE-2
ODP
PilZ
Motif
Other DBs
NCBI-ProteinID:
CAP75833
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Position
complement(1361837..1363771)
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AA seq
644 aa
AA seq
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MFQDNPLLAQLKQQLHSQTPRAEGVVKATEKGFGFLEVDAQKSYFIPPPQMKKVMHGDRI
IAVIHSEKERESAEPEELVEPFLTRFVGKVQGKNDRLAIVPDHPLLKDAIPCRAARGLNH
EFKEGDWAVAEMRRHPLKGDRSFYAELTQYITFGDDHFVPWWVTLARHNLEKEAPDGVAT
EMLDEGLVREDLTALDFVTIDSASTEDMDDALFAKALPDGKLQLIVAIADPTAWIAEGSK
LDKAAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTLSTDGTIEDNIEF
FAATIESKAKLVYDQVSDWLENTGDWQPESEAIAEQVRLLAQICQRRGEWRHNHALVFKD
RPDYRFILGEKGEVLDIVAEPRRIANRIVEEAMIAANICAARVLRDKLGFGIYNVHMGFD
PANADALAALLKTHGLHVDAEEVLTLDGFCKLRRELDAQPTGFLDSRIRRFQSFAEISTE
PGPHFGLGLEAYATWTSPIRKYGDMINHRLLKAVIKGETATRPQDEITVQMAERRRLNRM
AERDVGDWLYARFLKDKAGTDTRFAAEIVDISRGGMRVRLVDNGAIAFIPAPFLHAVRDE
LVCSQENGTVQIKGETAYKVTDVIDVTIAEVRMETRSIIARPVA
NT seq
1935 nt
NT seq
+upstream
nt +downstream
nt
atgtttcaggacaacccgctgctagcgcagcttaaacagcaactgcattcccagacgcca
cgcgctgaaggggtggtaaaagccacagaaaaaggctttggcttcctggaagtcgacgcg
caaaaaagttatttcattccgccgccgcagatgaaaaaagtcatgcatggcgaccgaatt
atcgcggtgatccacagtgaaaaagaacgtgaatccgcagagccagaagaactggttgaa
ccgttcctgactcgtttcgtgggtaaagttcagggcaaaaatgaccgtctggccatcgtt
cctgatcatccactcttaaaagacgccattccttgccgcgcagcccgtggcctgaaccac
gagtttaaagaaggcgactgggcggttgccgaaatgcgccgtcatccgctgaaaggcgat
cgttctttctatgctgaactgacacaatacatcacttttggtgacgatcactttgtaccg
tggtgggttacccttgcgcgtcataatctggaaaaagaagcaccagacggcgtcgctacc
gaaatgctcgatgaaggtctggttcgtgaagatctgactgcgctggattttgtcaccatc
gacagtgccagcacagaagatatggatgacgcccttttcgccaaggcgttaccggatggc
aaacttcagctgattgtggcgattgccgatccaaccgcgtggattgctgaaggcagcaag
ctggacaaagccgcgaaaattcgcgcattcaccaactatctgcctggcttcaacatccct
atgctgcctcgcgagctttctgacgatctctgctcactgcgcgccaatgaagtccgcccg
gtactggcatgccgcatgacgctctccactgatggcaccattgaagataatatcgaattc
tttgccgccaccatcgaatccaaagcgaagctggtgtatgaccaggtttctgactggctg
gaaaataccggtgactggcagcctgaaagcgaagcaattgccgaacaagtccgtttgcta
gcacaaatttgccaacgccgcggcgagtggcgtcataaccacgcactggtgtttaaagat
cgcccggattaccgctttattctcggtgaaaaaggtgaagtgctggatatcgttgccgag
cctcgtcgcattgccaaccgtatcgtcgaagaagcgatgattgccgctaacatttgtgcg
gcccgcgtactgcgcgataagctcggttttggcatctataacgtgcatatgggctttgat
ccggcgaatgccgacgcgctggcagcgttgctgaaaacgcacggtctgcatgtcgatgct
gaagaagtgctcacgctggacggtttctgcaaactgcgtcgtgaactggatgcgcaacca
actggtttcctcgacagccgcattcgtcgcttccagtcatttgctgaaattagcactgaa
cccggtcctcactttggcctcggtctggaagcatacgccacctggacttcgccgatccgt
aaatatggcgacatgatcaaccaccgtctgctgaaagcggttatcaaaggcgaaactgcg
acgcgtccacaggatgaaatcactgtccaaatggccgagcgtcgccgtctcaaccggatg
gcagaacgtgatgttggcgactggttatacgcacgcttcctgaaagacaaagccgggacc
gacacccgtttcgcggcggaaattgtcgatatcagccgtggcggcatgcgtgttcgtttg
gttgataacggcgctatcgcctttattccagcacctttcttacacgctgtgcgcgatgaa
ctggtttgcagccaggaaaacggcactgtacaaattaaaggtgaaacggcttacaaagtg
actgacgttattgacgtcaccattgccgaagtccgcatggaaacccgcagcattattgcg
cgcccagtcgcgtaa
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