Enterobacter ludwigii EN-119: BH714_04490
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Entry
BH714_04490 CDS
T04719
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
elg
Enterobacter ludwigii EN-119
Pathway
elg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
elg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BH714_04490
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
elg03019
]
BH714_04490
03009 Ribosome biogenesis [BR:
elg03009
]
BH714_04490
Enzymes [BR:
elg01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
BH714_04490
Messenger RNA biogenesis [BR:
elg03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
BH714_04490
Ribosome biogenesis [BR:
elg03009
]
Prokaryotic type
rRNA processing factors
BH714_04490
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
PNPase_C
S1
Motif
Other DBs
NCBI-ProteinID:
AOT42588
LinkDB
All DBs
Position
complement(952360..955470)
Genome browser
AA seq
1036 aa
AA seq
DB search
MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY
GAERHGFLPLKEIAREYFPANYNSHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFI
SLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALASLELPDGMGLIVRTAGVGKSAEAL
QWDLSFRLKHWEAIQKAAESRAAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELA
RQHIAALGRPDFTSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDTTEALT
AIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVE
NRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLS
LSILRLIEEEALKENTKEVHAIVPVPIASYLLNEKRAAVSAIESRQGDVRCIIVPNDQME
TPHYHVLRVRKGEETSTLSYLLPKLHEEEMALPSDEEPAERKLPEQPALATFIMPEAPPE
TALEKPVTKPVAQKPEAVAVKAQPEQPGLLSRLFGALKKMFAGEEVQQPEQPKEAPKEAK
PERQQDRRKRQNNRRDRNDRNDRNERRDNRSDNNEGREQREDNRRNRREKQPQNVEDREI
RQQAGDESEKSKQRDEQQPRRERSRRRNDEKRQAQQEVKNLNREEPVEQQESEQEERTQV
MPRRKQRQLSQKVRVGALPVEETVIIPAEASDTAPGTQLAKVDLPAVVESNAEQDDNGEG
RDNAGMPRRSRRSPRHLRVSGQRRRRYRDERYPTQSPMPLTVACASPEMASGKVWIRYPV
ARQEQVVEEQAVTEEVIAPVAATEEAVNEAAIVVEPQAVESEAPHAVDVETTHPEVIAAP
VDAAPQLIAEEDTVVAEDVVAEVQPAAAVEETPDVVVETVTEDVVQDVEIDVEPVREAAK
AEEPEVKAEPVITAPAPAHVATAPMTRAPAPEYVPEAPRHSDWVRPAFNFDGKGSAGGHS
ATHQATAPATRPQSVE
NT seq
3111 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagaatgttaatcaacgcaactcagcaagaagagttgcgtgtcgcccttgtggat
gggcagcgcctgtacgatctggatatcgaaagtcctggacacgaacagaaaaaagcgaac
atttacaaaggtaaaatcacccgcattgaaccaagccttgaagctgcatttgtcgattac
ggtgctgagcgtcacggtttcctccctctgaaagaaatcgcccgcgaatatttccctgca
aactataactcccatggccgcccaaacatcaaagatgtgttgcgtgaaggtcaggaagtc
attgttcagattgataaagaagagcgtggcaacaaaggtgccgcactgaccacctttatc
agtcttgcgggaagttacctggttctgatgccaaacaacccgcgcgccggtggtatctct
cgccgcatcgaaggtgatgaccgtaccgagctgaaagaagcgctggcaagtcttgagctg
cctgacggtatgggacttatcgtgcgtaccgcaggcgtcggcaaatctgccgaagcgctg
cagtgggacttaagcttccgtctgaagcactgggaagcaatccagaaagcggcagaaagc
cgcgcagcgccgttcctgattcaccaggaaagcaacgtgattgtgcgtgccttccgtgac
tacctgcgtcaggacatcggtgagattctgatcgataatccgaaagtgcttgagctggcg
cgccagcacattgctgcgctgggtcgtccggatttcaccagcaaaatcaaactgtacacc
ggtgaaatcccgctgttcagccattatcagatcgaatcgcagattgaatccgctttccag
cgtgaagtgcgtctgccatccggtggttctatcgttattgatacgaccgaagcgctcacc
gccatcgacatcaactccgcacgtgctacgcgcggcggtgatatcgaagagaccgccttc
aacaccaaccttgaagccgctgatgaaatcgcccgccagctccgcctgcgtgacctgggt
ggtctgattgttatcgactttatcgacatgaccccggtgcgccaccagcgtgcggttgaa
aaccgtctgcgcgaagcggtacgtcaggatcgtgctcgtatccagattagccatatctca
cgcttcggcttgctggagatgtcccgtcagcgtctgagcccttcactcggtgaatccagc
catcacgtctgtccgcgctgctccggtaccggtaccgttcgtgataacgaatctctgtcc
ctctctattctgcgtctgattgaagaagaagcgctgaaagagaacaccaaagaggttcat
gccattgttcccgtgccaattgcgtcctacctgctgaacgaaaaacgtgcagccgtcagc
gcaattgaatcacgccagggcgatgttcgctgcatcatcgtacctaacgatcagatggaa
actccgcactaccacgtgctgcgtgtccgtaagggtgaagagaccagcacgctcagctat
ctgctgcctaagctgcatgaagaagagatggcgctgccttccgatgaagaacctgccgag
cgcaaactgccagagcagccagccttagcgaccttcatcatgcctgaagctccgccagaa
acggcgctggaaaaacctgtgaccaaaccggttgcgcaaaaaccagaagccgttgcggtc
aaagcccagccagaacaaccgggtctgctgagccgcctcttcggtgcgctgaagaagatg
tttgcaggcgaagaagtccagcagcctgagcaaccgaaagaagcaccgaaagaagcgaaa
cctgaacgtcagcaggaccgtcgtaaacgtcagaacaaccgccgtgaccgtaacgatcgt
aatgaccgtaacgaacgccgtgacaaccgttcggacaataatgagggtcgtgagcaacgc
gaagacaaccgtcgcaaccgtcgcgagaagcaaccgcagaatgttgaagatcgtgaaatt
cgccagcaggcgggcgatgagtctgagaagagcaaacagcgcgacgagcagcagccacgc
cgtgagcgtagccgtcgtcgtaacgacgagaagcgccaggcgcagcaggaagtcaaaaac
ctgaaccgcgaagagcctgttgaacaacaggaaagcgagcaggaagaacgtactcaggtt
atgccgcgtcgtaagcagcgccagctgtcacagaaagtgcgtgtaggcgccctgccggtg
gaagagaccgtcatcatccctgcagaagcaagtgacactgcaccaggcactcaactggcg
aaagtggatctgccggccgtcgtcgaaagcaacgctgagcaagacgataacggtgaaggc
cgtgataacgcgggtatgccacgtcgttcacgccgctctccgcgtcacctgcgcgtcagc
ggtcaacgtcgtcgtcgttatcgcgatgagcgttacccgacacagtcgccaatgccatta
accgtggcgtgcgcgtctcctgaaatggcatccggtaaagtctggatccgctacccggtt
gctcgtcaggagcaggttgtggaagaacaggctgtcaccgaagaggtgattgccccggta
gccgcaactgaagaagcggtaaatgaagccgctatcgtggttgagccacaggccgttgag
tcagaagcgcctcatgcagtagacgttgaaaccacgcaccctgaagtgattgccgcgccg
gttgacgccgcaccgcagcttattgctgaggaagacaccgtggtcgctgaagacgttgtt
gctgaggttcagccagcagcagcggtagaagagaccccggacgtggttgtcgaaaccgtg
actgaagacgtggttcaggacgttgaaattgacgtcgaaccggtgcgtgaagccgcgaaa
gcagaagagccagaagtgaaagccgagccggtaatcacagctccggcccctgctcacgtt
gcgacagccccgatgactcgcgcaccagcgccggaatatgtgccggaagcgccgcgtcac
agtgactgggtccgccctgcgttcaactttgacggtaaaggctctgccggtggccacagt
gcaacgcatcaggcgacagcaccggctacccgtccgcagtctgttgagtaa
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