Candidatus Electrothrix sp. GW3-4: WGN25_01990
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Entry
WGN25_01990 CDS
T11264
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
elgw Candidatus Electrothrix sp. GW3-4
Pathway
elgw03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
elgw00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
WGN25_01990 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
elgw03019
]
WGN25_01990 (rnr)
03016 Transfer RNA biogenesis [BR:
elgw03016
]
WGN25_01990 (rnr)
Enzymes [BR:
elgw01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
WGN25_01990 (rnr)
Messenger RNA biogenesis [BR:
elgw03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
WGN25_01990 (rnr)
Transfer RNA biogenesis [BR:
elgw03016
]
Prokaryotic type
tRNA degradation factors
WGN25_01990 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
OB_Dis3
RNase_II_C_S1
Gar1
MCM5_C
OB_cyt-4
Motif
Other DBs
NCBI-ProteinID:
WYD84732
LinkDB
All DBs
Position
443674..445896
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AA seq
740 aa
AA seq
DB search
MTKKKHRGRSKKEHFPRTQQHHDKEHSLSTTLLSFFQKQTKPVSLDTIINELAPAQPSRK
LLKETLASLEKKGKLRRRRQGWMLAEQRKTVRATLSLTAKGFGFAVLEGNVARQQKDIFI
PASALNGATHGDTVLVQPSGSPKRPEGEVVEVEKRAFTHVCGVYMSGKNSGYVTPDQDKL
PFSIQVRRNDAMDADDGMAVRVEILDYGAKQRLPVGRVVEILGPVDSVQVQIRMAVEQFQ
LPRSFPQHVEQAAAALVPLTEPEPGRKDLRYLRHVTIDGATAKDFDDAIAVQKTKKGFRL
FVSIADVSHYVRPGSAIDQEAYQRGTSVYLPDLVLPMLPERLSNDLCSLVPDQDRPAFTA
ILEFDQQGRRIGAKFTRSLIRSYQRFTYDTVHQAIYLREQEARRQHKSLLPMLEKAKELA
ALLQGQRMERGALGFTVPESNIQLEGDRVCSISRLKRNQAHLLIEEFMLAANEAVGATLD
QAGASVLFRVHEEPDGDKVKDFAELAWSLGLKLPKTELTPSWFAGALELSKDSPTEYVVN
NLLLRTMQRARYTPTNYGHFGLAAEYYIHFTSPIRRYPDLVAHRVMQHLLLRKSGEKTGK
AARSNKGTRGKILPDGVTLEAAGTFLSARERVAVEAERDVQARLAALYLRDKVTGQFEAI
ISGVTSFGLFVELVDCLISGAIPVNEMEDDYYHYDSKGHKLVGERTGRVHRLGDLVRVQL
DQVDMLSRKITFSLVGKGGE
NT seq
2223 nt
NT seq
+upstream
nt +downstream
nt
atgacaaaaaaaaaacatagaggtcgaagcaagaaggaacacttccctcgaacacagcag
caccacgacaaagaacactccctgagcacgaccctgctctcctttttccagaaacagaca
aagcctgtctcgctggatacaatcattaacgagctggctcctgcccagccttctcgaaaa
ctccttaaggaaacactcgccagcctagaaaaaaagggcaagctgcggcggcgcagacaa
ggctggatgcttgcggaacaaaggaagaccgtccgcgcgaccctgtccctgaccgcgaag
ggctttggttttgccgtgcttgagggcaatgttgcccgccagcagaaggatatttttatt
cctgcctcggccctgaacggggcaacccacggtgatacggtgctggtgcagcccagtggt
tcgcccaaacggccggagggcgaggtggtggaggtggagaaaagggcctttacccatgtc
tgtggggtctacatgagtgggaagaatagcggttatgtgaccccggatcaggataagctg
cccttcagtattcaggttcggcgcaatgatgccatggatgccgatgatgggatggcggtg
cgggtggagatccttgattatggtgccaaacaacggctgccagtgggcagggttgtggag
atcctcggaccagtggattcggtccaggtgcagatccgtatggctgtggagcagtttcag
ctgccccgttcttttcctcagcatgtggaacaggccgcagcagccttagtaccgctgacc
gagccagagccgggccgaaaagacctgcgatatcttcgccatgtcaccattgacggggcc
acggctaaggattttgacgatgccattgccgttcagaagaccaagaagggctttcgtctc
tttgtctctattgccgatgtcagccattatgtgcgaccgggctctgccattgatcaggag
gcctatcagcgcgggaccagcgtctacctgccggatctggtcttgcccatgctgcccgag
cggctctctaatgacctctgttccctggtccctgaccaggaccgccctgcctttactgcc
atcctggagtttgaccaacaggggcgacgaatcggggccaaatttacccggagcctgatc
cgcagttatcagcgttttacctatgacacggttcatcaggctatctatctccgtgagcag
gaggcccgtcggcaacataagtctctgttacccatgctggaaaaggccaaggagctcgct
gccctgcttcagggccagcgtatggagcgcggcgcactgggctttactgtgccggagagt
aatatccagcttgagggggatagggtctgttccatctctcgcctgaaacggaatcaggcc
catctcttgattgaggaattcatgctggctgccaacgaggccgtgggcgcgaccctggat
caggccggggcctcggtcctgttccgggtccatgaggaaccggatggagacaaggttaag
gattttgccgagctggcctggtccctggggctcaagcttcccaagaccgagctcacgcct
tcctggtttgccggggccctggagctctccaaggattctcccacagaatatgtggtcaat
aatcttctcctccgtactatgcagcgggccagatacaccccgacgaattacggccatttt
ggcctggctgcggagtactatatccatttcacctcacccatccggcgttacccggatctg
gtagcccaccgggtcatgcagcatctgctgctcaggaaatccggggaaaaaacaggtaaa
gcagctcgcagcaataaaggaacgcggggaaagatcctgcctgatggagtaactctggag
gcagcagggacctttctctcggcccgcgaacgggttgccgtggaagcggagcgagatgtc
caggcccgccttgctgccctctacctccgtgataaggtgaccgggcagtttgaggccatc
atctccggtgtgacctcctttggtctttttgtggagctggttgattgcctgatcagcggg
gctattccggtcaatgagatggaggatgattattaccattatgacagcaagggccataaa
ctggtgggtgagcggacaggccgggtccatcgtctgggtgacctggtgcgggtccagctt
gatcaggttgacatgctgagcagaaaaattaccttttccctggttggcaagggaggagaa
taa
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