Candidatus Electrothrix sp. GW3-4: WGN25_03215
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Entry
WGN25_03215 CDS
T11264
Name
(GenBank) DUF3418 domain-containing protein
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
elgw Candidatus Electrothrix sp. GW3-4
Brite
KEGG Orthology (KO) [BR:
elgw00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
elgw03019
]
WGN25_03215
Enzymes [BR:
elgw01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
WGN25_03215
Messenger RNA biogenesis [BR:
elgw03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
WGN25_03215
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
DEAD
AAA_19
WHD_HA2
AAA_22
nSTAND3
SRP54
AAA_30
nSTAND_NTPase5
T2SSE
SLFN-g3_helicase
PhoH
ABC_tran
AAA_23
ResIII
Zeta_toxin
Motif
Other DBs
NCBI-ProteinID:
WYD84955
LinkDB
All DBs
Position
678541..682623
Genome browser
AA seq
1360 aa
AA seq
DB search
MCVTPLTPMQLNYPTQLPITDRKDEIVQAVREHQVIVIAGDTGSGKTTQLPKMCLEAGRA
GEGTMIGCTQPRRIAALSVTERVQEELGQVRTVGSKIRFQDRTGPKTRIKFMTDGILLAE
TRGDRDLRAYDTLIIDEAHERSLNIDFLLGYLHQLLARRQDLKLIIASATIDTEKFSKHF
HDAPIIQVEGRTYPVTVEYCPPDNDDDESNQDIDRLVADQIVRLMARRGGDILAFLPTER
DILDTVALLRKELADRALILPLFGRLQGGEQRRIFRSAQRRKIIVATNVAETSITVPGIE
CVVDTGLARIAHYNVRAGTTHLPVTRIARASCDQRAGRCGRVGPGRCIRLYSEEDYLARD
EFTLPEIQRSNLAEVILQMLSLRLPEPRNFPFIDPPAPRAVNDGFRILRELGALDSEHQL
TERGRIMARLPLDPRISRMIIEGAELGVLRETTIIAAALAIQDPRVQPPDKLEKARQAHR
AFNYPGSDVMTLVNMWDTCRGEALPSPGSSDKGQSRQDDKEQTREAAPTPSAGQLRRFCE
ANFCSWQRMREWFDIHEQILRILKQHKEFVSALDRMAESSSLQNNVGTRHAVSLPESQDR
RGEPCDRPLRSPSNRRDEPLCSPGLSDKGQTRGSAPTAPTLVHQALTAGFLRNIALRKEK
NTYQISGNREAMLFPGSGLYNKGGQWIVAADFVHTSQLFARMAATIEVDWLERLGGDLCK
RSYSDPHWQKKSGQVIALEKVSLFGLVIAADRRVNYGRISKKTAAEAKEIFIREALIPGE
LKGKYPFLEHNLALARQQEELEERLRRRGIMTDEQVLYEFYDQRLELVYDRFTLNRFLSR
KRKQAKPGEEADGFLRMTEEDLCQSQPESDELYRFPKTLTTPQGELRLSYTFHPGQDDDG
VTVDIPVSCCPALSPNLFEWLVPGLLEDKVAALLKGLPKRLRKLFVPLPDTAALLMDGMD
LYQGSLYPALERFLLRHFQVRVTRADWQLENLPLHLRMRFRLCDEQGKALYYTRDFHKLA
LHCGSMRQTMQGGQMRKVEDLPERKNIQVWDFAVAPRPLPARDEHNRVTGLYYPALFLGL
SKGQEQQLCLRYIADPEQAVRENRKGLRFLYGQYFSKEFKAVAKECKAAVAGHTASWLSL
GMKAGAGETRDLLLNCIVDSLFQISGDLPNKTGFELILDDLREQGVTRLAREQLNQVLDL
LAERRKTQVALTQSKQRAGKSRSADQARFAEYEDLLERLVPADFLDRFSPEEAGDRKRYL
QALAKRVERAEHSPHKDADKVKRVQPFAEHLRQLDRKEAEQKAGGSISAPCREAVVLYRR
MVEEFRISVFAPEIGTAMPVSEKRLKQQWKLVEESCRRVE
NT seq
4083 nt
NT seq
+upstream
nt +downstream
nt
ttgtgcgtaacgccactaacacctatgcagctcaactaccctacacagctccccatcacc
gaccgcaaggacgagatcgtccaggccgttcgggaacatcaggtcatcgttattgcaggc
gataccgggtccggcaagacaacccagctccccaagatgtgcctggaggcaggccgggca
ggggaggggaccatgatcggctgtacccagccccgccgtattgccgccctgtcagtcacc
gagcgggtgcaggaggagctggggcaggtccggacggtggggtccaagattcgctttcag
gatcgcaccggcccgaaaacccggatcaagttcatgaccgacgggattcttctggccgag
acccggggcgaccgcgatctgcgggcctacgacaccctgatcattgacgaggcccatgag
cgcagcctgaacatcgactttctgctcggctatctccatcaattgctggcccgccgtcag
gacctcaagctgatcattgcctcggccaccattgataccgagaaattcagtaagcatttt
cacgatgccccgattatccaggtggaaggacgcacctatccggtcacggtggaatactgc
cccccggacaacgatgacgatgaaagcaatcaggatatcgaccggctggttgctgaccag
attgtcaggcttatggcgcggcgcggtggggatatcctggcctttctccccacggaacgg
gacatcctggatacggtggccttgctgcgtaaggagctggctgaccgggccctgattctg
cccctgttcggacggctccagggcggggagcagcggcgtatttttcgttctgcgcagcgg
cgcaagatcattgtggccaccaatgtggcagagacctccatcactgtgccgggcatagaa
tgcgtggtggacactggcttggcgcggatcgcccattataatgtgcgggccgggaccacc
catctgcccgtgaccaggattgccagggccagttgcgaccagcgagccgggcgttgtggt
cgggtagggccagggcgttgtatccgcctctacagcgaggaggattatcttgcccgcgat
gagttcaccctgccggagatccagcgttccaatctggctgaggttattctccagatgctc
agtcttcgcctgcctgagccgcgcaattttccctttatcgatccgccagcacccagagcg
gtcaatgacggctttcgtattcttcgggaactgggggcccttgacagcgagcaccaactc
accgagcggggccggatcatggctcgcctgcccctggacccgcgcatctcccggatgatt
atcgaaggcgcggaactgggcgtgctccgggaaaccacgatcattgccgcagccctggct
attcaggacccccgtgtccagccgccggataagctggaaaaggcccggcaggcccaccgg
gccttcaattatcccggctcggatgtcatgaccctggtgaatatgtgggatacctgtcga
ggtgaagccctgccttcgcccggttcgtctgataaagggcagagtcgccaggatgataaa
gagcagacacgggaagctgcccctacaccatcagccggtcagttgcgccgtttttgcgag
gccaatttctgctcctggcagcggatgcgggaatggtttgatattcatgagcagatcctc
cgtatcctcaagcagcataaggaatttgtctcggccttggatcgtatggccgaatcgtcg
tctttgcagaataatgtagggacacggcatgccgtgtccctaccggaatcgcaggatcgt
aggggcgaaccttgtgatcgcccgttacgttccccatcaaaccgtagggacgaacccctg
tgttcgcccggtttatctgataaagggcagacacggggatctgcccctacagcaccaacc
ctggttcatcaggccctgaccgcaggattcctgcgcaacattgccctgcgcaaggaaaag
aatacctatcagatctccggcaaccgggaggccatgctctttcccggttccggcctgtat
aataaggggggacagtggatcgtggcagcggattttgtccatacctcgcagctctttgcc
cgcatggccgccacgattgaggtggactggctggaacgcctcggcggtgatctctgcaaa
cgctcctactcggacccgcattggcagaaaaagtccgggcaggtcattgccctggaaaag
gtctccctgttcggtttggtgattgctgcggatcggcgggtgaactacgggcgcatcagc
aagaaaacagcagcggaagccaaggagatttttatccgggaggctttgatccccggtgaa
ctcaagggcaaatatccctttcttgagcataatctggccctggctcggcaacaggaagag
ctggaggaacgcctgcgtaggcgcggcatcatgactgatgagcaggttctgtacgagttc
tatgatcagcggctggaactggtgtatgaccgcttcaccctgaaccgctttttgagcagg
aaacgcaagcaggccaagcccggtgaagaagcggacggctttctcaggatgacagaggaa
gatctttgccaaagccaaccggaaagcgatgagctgtatcgctttccgaaaaccctgacc
acacctcaaggcgagttgcgtctttcgtataccttccaccctggtcaggatgacgacggc
gtgactgtggatatcccggtctcctgctgtccggccctgtcaccgaatctctttgagtgg
ctggtgcccggtctgctggaggacaaggtggcggccttgctcaaggggctgcccaaacgc
ctgcgcaagctctttgtccctttgccggacacggcggccctgctcatggacggtatggat
ctctaccaaggttccctgtacccggccctggagcgttttcttctccgtcattttcaggtc
agggtgacacgggcggactggcaattggagaatctccccctccacctgcgtatgcgtttc
cgtctctgcgacgagcagggaaaggctctgtattacacgcgtgatttccataagcttgct
ctacattgcggttcaatgcggcagacaatgcagggagggcagatgcggaaggtcgaagac
ctgccagaaagaaagaatatccaggtatgggattttgccgtggctccgcgccctctgcct
gcacgggacgagcataaccgggtcacgggcctctactatccggctttgttcctgggattg
agcaaggggcaggagcagcagctttgcctgaggtatattgccgaccctgagcaggcagtt
cgagagaacagaaaggggcttcgtttcctctatgggcagtatttcagcaaggagtttaag
gcggttgccaaggaatgcaaggcagcggtggccgggcataccgcctcctggctctctctt
gggatgaaggccggggccggagaaaccagggacctgttgctcaactgtattgtggacagc
ctgtttcagattagcggggacctaccgaacaagactggctttgagctgatccttgacgat
ctccgggagcagggagtgacccgactggcgagggagcagctcaatcaggtgctggatctg
ctggcggaacgccgcaagactcaggtcgccctgacgcaaagtaaacaacgggccgggaaa
agtcggagtgcggatcaggcccgctttgccgaatatgaggacttacttgagagactggta
cctgcggatttccttgatcgattttctccagaagaggccggtgaccgaaagcggtacctt
caggccctggccaagcgggtagaacgggccgagcatagtccgcataaggatgcggataag
gtcaagagggttcagccctttgctgagcatctccgtcagctggatcggaaagaggcggag
cagaaagcaggcgggagcatttcggctccctgccgggaggctgtggtcctgtatcgccgc
atggtggaggagttccgtatatctgtctttgccccggaaatcggtacagccatgccagtc
tcagaaaaacggctgaagcagcaatggaagctggtggaggagagctgcaggagggtggaa
taa
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