Candidatus Electrothrix sp. GW3-4: WGN25_15865
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Entry
WGN25_15865 CDS
T11264
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
elgw Candidatus Electrothrix sp. GW3-4
Brite
KEGG Orthology (KO) [BR:
elgw00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
elgw03016
]
WGN25_15865
Enzymes [BR:
elgw01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
WGN25_15865
Transfer RNA biogenesis [BR:
elgw03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
WGN25_15865
Prokaryotic type
tRNA splicing ligases
WGN25_15865
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
WYD83428
LinkDB
All DBs
Position
complement(3577209..3578387)
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AA seq
392 aa
AA seq
DB search
MKNVISTEKKPIKLWLDDLEAGALEQAKHLANLPFAFRHIALMPDAHQGYGMPIGGVLAT
EGVVVPNAVGVDIGCGMCAVQTSLQEIEQDALKKIMGEIRKQIPVGFSHHKKAQHASFMP
EGYTEESGLDGLKVVREEYQAALRQVGTLGGGNHFLEIQQGSDGFVWLMIHSGSRNLGYR
VAHHYNKLAIALNQKWHSSVPEKWQLAFLPLDGRKGQDYLQEMQYCVDFALANRQLMMHR
LQETFAEIVGDVDFGEMLNIAHNYAAREHHFKKDVMIHRKGATRASTDQLGIIPGSQGTA
SYIVKGKGEPESFKSCSHGAGRKMGRKQAQRELDLAAEKERLDALGVIHGIRNTKDLDEA
PSAYKDISVVMENQQDLVEIQVELRPLAVIKG
NT seq
1179 nt
NT seq
+upstream
nt +downstream
nt
atgaagaacgttatcagcacggaaaagaaacccattaagctctggctcgacgaccttgaa
gccggggccttagagcaggcaaagcatctggccaacctgccctttgccttccgccatatc
gcccttatgccggatgcccatcagggctatgggatgcccattggcggagtcttagccact
gagggtgtggtcgtccccaatgcggttggggtggatattggctgtgggatgtgtgcggtc
cagacctccctgcaagagatagaacaggatgccctgaagaagatcatgggcgagatccgt
aagcagataccggtggggttcagtcatcataaaaaagcccagcatgcctcctttatgcct
gaaggatatacagaagagagtggtcttgatgggttaaaggtcgtgcgcgaggaatatcag
gccgcgctcaggcaggtaggtaccttgggaggagggaatcacttcctggagatccagcag
gggagcgacggctttgtctggctgatgatccactcgggaagccgtaacctcggttataga
gtggcccatcattataataagctggccattgccctgaaccagaaatggcatagctcggtg
ccggagaaatggcagctggccttcctccctctggacggccgcaagggccaggattatctc
caggagatgcagtattgcgttgattttgccctggccaaccggcagctgatgatgcacagg
ttacaggagacctttgctgagatcgttggtgatgttgacttcggggagatgttgaatatc
gcccataactatgcggcaagggaacatcatttcaaaaaggatgtgatgatccaccgtaag
ggcgcgaccagggcatctacggatcagctgggtattatccctgggagtcagggaacagcg
agttacatcgtcaaagggaaaggtgagccagagagctttaagtcctgctcacacggagcc
gggcgcaagatggggcgcaagcaggcgcagagagagcttgatcttgcggcagagaaagag
cggcttgatgctcttggggtgatccacggaatccgcaacaccaaggaccttgatgaggcg
ccaagtgcctataaggatatctccgtggtcatggagaatcagcaggatctggtcgagatc
caggtggaactacggcccctggcagttattaaggggtag
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