Candidatus Electrothrix sp. GW3-4: WGN25_16335
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Entry
WGN25_16335 CDS
T11264
Name
(GenBank) Rne/Rng family ribonuclease
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
elgw Candidatus Electrothrix sp. GW3-4
Pathway
elgw03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
elgw00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
WGN25_16335
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
elgw03019
]
WGN25_16335
03009 Ribosome biogenesis [BR:
elgw03009
]
WGN25_16335
Enzymes [BR:
elgw01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
WGN25_16335
Messenger RNA biogenesis [BR:
elgw03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
WGN25_16335
Ribosome biogenesis [BR:
elgw03009
]
Prokaryotic type
rRNA processing factors
WGN25_16335
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Antiterm
Motif
Other DBs
NCBI-ProteinID:
WYD83519
LinkDB
All DBs
Position
3690707..3692854
Genome browser
AA seq
715 aa
AA seq
DB search
MTNETEQEIKKQETQKIRKVSTGAWWKSFKKKKVEKNSRANEQAQEVKAKPGAPEKTQPA
EPEQIKPAPPKSQNKANRKPKRPTKQTSAKTAQQAPPAEQPVKEAQETTPEQAETTGVQE
EKKRPSRRPRRRGKKPAAAQQSVKEENKQEAQEQAKDQGEAQKELQETRTKNTPSKANKA
NRNKQAPAQKAKNAPSKQEKADSIEEESEQNQQKKQKVRLLINAEEPEECRIALVEDGRL
ESFHVNTVVRERTKNNIYKGRIVSIEANLQAAFVEIGTGRNGFLPFNDIHPEYYRQDISE
QSRQLINQQQWKKLKIEDVIKRGQEVLVQVVKEVTGNKGANMTTYLSLPGRCLVLMPGSD
SAGISRKISGEQRRSRLREIMSDFNIPEGVGYIVRTASAEITKTALQQDLHYLTGLWTEI
KKRGQTMPAPALVYEDQDTVHRFLRDHFTQDIQEIIVDTDDSYNQVTKFVDLLPTRQKKV
LVRLHRGAKPIFNQSNIEEQIESIYQPQVQLPSGGSIVIDPTEALVAIDVNSGRTSQKGD
FEKSIFLANMEAAEELARQLRLRDLGGLIVVDFIDMRSKNNIKEVEKKVKNAMKRDKAKV
DISRISRFGLMQISRQKMGAPIEKGSYRRCEHCEGRGVVRSVETLALYYLRRIQTGVTRK
KVKIVEAELPLEVGQYLLNKKRAEIMELENKHQARIIILPNPGMKPSENNIRFLA
NT seq
2148 nt
NT seq
+upstream
nt +downstream
nt
atgaccaatgagacagaacaagagatcaaaaaacaggaaacccaaaaaatacgcaaggta
agcaccggggcctggtggaagagctttaagaaaaaaaaggtcgagaaaaacagtcgggcc
aacgaacaggctcaagaggtgaaagcaaaaccgggagcgcccgagaaaacgcagcccgct
gagcctgagcagatcaagcctgccccccccaaatcccagaacaaggccaaccgcaagccc
aaacgcccgaccaagcagacatcagccaaaacagcgcaacaagcccctccggcagagcag
cctgtaaaggaagcacaggaaaccacaccggaacaagccgagaccaccggagtccaggag
gaaaagaaaagaccctcgcgcaggccccggaggcgaggcaagaaacccgctgctgcgcaa
caatctgtaaaggaagaaaacaagcaagaagctcaagaacaggccaaggaccaaggagag
gcgcaaaaggagctccaggaaaccaggacgaaaaacacgccctcgaaggcaaacaaggca
aaccgcaacaaacaggcccctgcgcaaaaggcaaaaaacgccccaagcaagcaggaaaag
gcggacagcattgaagaagaaagcgagcagaaccagcaaaaaaaacaaaaggtccgcctg
ctgatcaatgcagaggagcccgaagaatgccggattgccctggtggaagacggtcgcctg
gagtcctttcacgtcaacacggtggtgcgcgagcggaccaagaataatatctataagggc
cgtattgtctctattgaggccaatctccaggccgcctttgtggaaatcggcactggccgc
aacggcttcctgccctttaacgatatccacccggaatattatcggcaggatatcagcgaa
cagagccgtcagctgatcaatcagcagcagtggaaaaagctcaagatcgaagatgtgatc
aagcggggccaggaggtcctggtccaggtggtcaaagaggtcacgggcaataagggcgcc
aatatgacgacctatctctccctgcccggacgttgcctggtccttatgccgggcagtgac
agcgcgggcatctcccgcaagatctccggggaacagcggcggagtcggttgcgcgagatc
atgtccgacttcaacatccctgagggcgtgggctatattgtccgcacagccagtgcagaa
atcaccaagaccgccctgcaacaggatctgcactacctcaccggcctgtggacggagatc
aaaaaacgtggtcagaccatgccagccccggccctggtctatgaggaccaggacacggtc
catcgttttctccgggatcatttcacccaggatatccaggagattattgttgatacggat
gattcctacaatcaggtcacaaaatttgttgatctgctcccgacccgccagaaaaaggtc
ctggtcaggttgcatcgcggggccaagcccatctttaatcagagcaatattgaagagcag
attgagtcgatctaccagccccaggtgcagctgccatccggcggctccattgtcattgat
cccaccgaggccctggtggccattgatgtcaactccggtcggacctcgcaaaagggcgat
tttgaaaaatccatctttctcgccaatatggaggcagcagaggagctggcccgccaactc
cgtctacgggacctgggcggtctgattgtggtggattttatcgacatgcggagcaagaac
aacatcaaggaggtggagaagaaggtcaagaatgccatgaaacgggataaggccaaggtg
gatatcagccggatctcccgcttcggcctgatgcagatctcccgccagaagatgggtgcg
cccattgagaaaggcagctatcgccgttgtgagcattgtgaaggtcgcggagtggtccgc
tctgtggagaccctggccctctactatctccgtcgcatccagactggagtaacccgcaag
aaggtaaaaattgtggaagccgagctacccctggaggttgggcaatatctgcttaataag
aagcgtgccgagatcatggagctggagaataagcatcaggcccgcattattatcctaccc
aaccctgggatgaaaccgagcgagaacaatatacgctttcttgcctaa
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