Escherichia coli O78 H11 K80 H10407 (ETEC): ETEC_4525
Help
Entry
ETEC_4525 CDS
T02069
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
elh
Escherichia coli O78:H11:K80 H10407 (ETEC)
Pathway
elh03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
elh00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ETEC_4525
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
elh03019
]
ETEC_4525
03016 Transfer RNA biogenesis [BR:
elh03016
]
ETEC_4525
Enzymes [BR:
elh01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
ETEC_4525
Messenger RNA biogenesis [BR:
elh03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
ETEC_4525
Transfer RNA biogenesis [BR:
elh03016
]
Prokaryotic type
tRNA degradation factors
ETEC_4525
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
WHD_RNase_R
RNase_II_C_S1
Rho_RNA_bind
Motif
Other DBs
NCBI-ProteinID:
CBJ04034
LinkDB
All DBs
Position
4912350..4914791
Genome browser
AA seq
813 aa
AA seq
DB search
MSQDPFQEREAEKYANPIPSREFILEHLTKREKPASRDELAVELHIEGEEQLEGLRRRLR
AMERDGQLVFTRRQCYALPERLDLVKGTVIGHRDGYGFLRVEGRKDDLYLSSEQMKTCIH
GDQVLAQPLGADRKGRREVRIVRVLVPKTSQIVGRYFTEAGVGFVVPDDSRLSFDILIPP
DQIMGARMGFVVVVELTQRPTRRTKAVGKIVEVLGDNMGTGMAVDIALRTHEIPYIWPQA
VEQQVAGLKEEVPEEAKAGRVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIA
DVSYYVRPPTPLDREARNRGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVS
SKGRLTGYKFYEAVMSSHARLTYTKVWHILQGDQDLREQYAPLVKHLEELHNLYKVLDKA
REERGGISFESEEAKFIFNAERRIERIEQTQRNDAHKLIEECMILANISAARFVEKAKEP
ALFRIHDKPSTEAITSFRSVLAELGLELPGGNKPEPRDYAELLESVADRPDAEMLQTMLL
RSMKQAIYDPENRGHFGLALQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQGNTTETG
GYHYSMEEMLQLGQHCSMAERRADEATRDVADWLKCDFMLDQVGNVFKGVISSVTGFGFF
VRLDDLFIDGLVHVSSLDNDYYRFDQVGQRLMGESSGQTYRLGDRVEVRVEAVNMDERKI
DFSLISSERAPRNVGKTAREKAKKGDAGKKGGKRRQVGKKVNFEPDSAFRGEKKPKPKAA
KKDVRKAKKPSAKTQKIAAATKAKRAAKKKVAE
NT seq
2442 nt
NT seq
+upstream
nt +downstream
nt
atgtcacaagatcctttccaggaacgcgaagctgaaaaatacgcgaatcccatccctagt
cgggaatttatcctcgaacatttaaccaaacgtgaaaaaccggccagccgtgatgagctg
gcggtagaactgcacattgaaggcgaagagcagcttgaaggcctgcgtcgccgcctgcgc
gcgatggagcgcgatggtcaactggtcttcactcgtcgtcagtgctatgcgctgccggaa
cgcctcgacctggtgaaaggtaccgttattggccaccgtgatggctacggctttctgcgg
gttgaaggacgtaaagatgatttgtatctctccagtgagcagatgaaaacctgcattcat
ggcgatcaggtgctggcgcagccgctgggcgctgaccgtaaaggtcgtcgtgaagtgcgt
attgttcgcgtactggtgccaaaaaccagccagattgttggtcgctactttaccgaagcg
ggcgtcggctttgtggttcctgacgacagccgtctgagcttcgatatcttaatcccgccc
gatcagatcatgggcgcgcggatgggctttgtggtggttgttgaactgacccaacgcccg
actcgtcgtaccaaagcggtgggtaaaatcgtcgaagtccttggcgacaatatgggcacc
ggcatggcggttgatatcgctctgcgtacccatgaaattccgtacatctggccgcaggct
gttgagcaacaggttgccgggctgaaagaagaagtgccggaagaagcaaaagcgggccgt
gtcgatctgcgcgatttacccctggtcaccattgatggcgaagacgcccgtgactttgac
gatgcggtttactgcgagaaaaaacgcggcggcggctggcgtttatgggtcgcgattgcc
gacgtcagctactatgtgcgcccgccaacgccgctggacagagaagcgcgtaaccgtggt
acgtcggtgtacttcccttcgcaggttatcccgatgctgccggaagtgctctctaacggc
ctgtgctcgctcaacccgcaggtagaccgcctgtgtatggtgtgcgagatgacggtttcg
tcgaaaggccgcctgactggctacaaattctacgaagcggtgatgagctctcacgcgcgt
ctgacctacaccaaagtctggcatattctgcagggcgatcaggatctgcgcgagcagtac
gccccgctggttaagcatctcgaagagttgcataacctctataaagtgctggataaagcc
cgtgaagaacgcggcgggatttcatttgagagcgaagaagcgaagttcattttcaacgct
gaacgccgtattgaacgtatcgaacagactcagcgtaacgacgcacacaagttaattgaa
gagtgcatgattctggcgaatatctcggcggcgcgtttcgttgagaaagccaaagaaccg
gcactgttccgtattcacgacaagccgagcaccgaagcgattacctctttccgttcagtg
ctggcggagctggggctggaactgccgggcggtaacaagccggaaccgcgcgactacgca
gagctgctggagtcggttgccgaccgtcctgatgcagaaatgctgcaaaccatgctgctg
cgctcaatgaaacaggcgatttacgatccggaaaaccgtggtcactttggcctggcattg
cagtcctatgcgcactttacttcgccgattcgtcgttatcctgacctgacgctgcaccgc
gccattaagtatctgctggcgaaagagcaggggcatcagggcaacaccactgaaaccggc
ggctaccattattcgatggaagagatgttgcaactgggtcagcactgttcgatggcggaa
cgtcgtgccgacgaagcaacgcgcgatgtagctgactggctgaagtgtgacttcatgctc
gaccaggtaggtaacgtctttaaaggcgtaatttccagcgtcactggctttggcttcttc
gtccgtctggacgacttgttcattgatggtctggtccatgtctcttcgctggacaatgac
tactatcgctttgaccaggtagggcaacggctgatgggtgaatccagcggccagacttat
cgcctgggcgatcgcgtggaagttcgcgtcgaagcggttaatatggacgagcgtaaaatc
gactttagcctgatctccagcgaacgcgctccgcgcaacgtcggtaaaacggcgcgcgag
aaagcgaaaaaaggcgatgcaggcaaaaaaggcggcaagcgtcgtcaggtcggtaaaaag
gtaaactttgagccagacagtgccttccgcggcgagaaaaaaccgaagccgaaagcggcg
aagaaagacgtgagaaaagcgaaaaagccatcggcgaaaacgcagaaaatagccgcagcg
accaaagcgaagcgtgcggcgaagaaaaaagtggcagagtga
DBGET
integrated database retrieval system
