Erythrobacter litoralis HTCC2594: ELI_06775
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Entry
ELI_06775 CDS
T00315
Name
(GenBank) ribonuclease
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
eli
Erythrobacter litoralis HTCC2594
Pathway
eli03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
eli00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ELI_06775
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
eli03019
]
ELI_06775
03009 Ribosome biogenesis [BR:
eli03009
]
ELI_06775
Enzymes [BR:
eli01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
ELI_06775
Messenger RNA biogenesis [BR:
eli03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
ELI_06775
Ribosome biogenesis [BR:
eli03009
]
Prokaryotic type
rRNA processing factors
ELI_06775
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
CHP02642
Anti-TRAP
Motif
Other DBs
NCBI-ProteinID:
ABC63447
UniProt:
Q2NA44
LinkDB
All DBs
Position
1401934..1404666
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AA seq
910 aa
AA seq
DB search
MATRMLIDARHTEETRVAVLKGNRIEEFDFESAEHKQIKGNIYLAKVTRVEPSLQAAFVD
FGGNRHGFLAFSEIHPDYYQIPQADREKLLAEEAEAAEEEARLRAEEEDRGEMPGDEYDA
EDESSGALAEDLAEDGLEEIDTSEKDKVATIEEGQLDSDDDDDDDSDDDDSDDDDDDDNN
GDNGKSRGRRGRGRGRGRHQGKGKGRGGKSRAKEVDAVRAKRQALRRRYKIQDVIQRRQV
MLVQVVKEERGNKGAALTTYLSLAGRYTVLMPNSSHGGGISRKISSASDRKRLKQVVSDL
SLPKQMGLIVRTAGLSRTKTEIKRDFDYLARLWDEIREKTLSSSAPSLIHSDSDLIKRAI
RDIYNREIEEVVVEGEEGYKLAKSFMKLLMPSHARRVKAYSDPVPLFQRYGAEDQLRAMY
DPVVQLKSGGYLVINPTEALVSIDINSGRSTKEHGIEQTATATNIEAAKEIARQLRLRDM
AGLIVIDFIDMEYNSNVRKVERAMKDALKNDRARIQVGRISGFGLMEMSRQRLRTGVLEA
TTRDCPHCDGTGLVRTASSAGLSALRLIEDEAAKGKGTVISLKASTEAAVYLLNSKRADL
QEIEDRYNVTVEVVPEGEDEGAKMSVGSSGPRPSEAPKFEPIVDDDDDEEEIEDDASDDD
DEDDDGQPRKRRRRRRGGRGRNKNKQNDRSDGDDDDSDEDDSDDSETSDDDDDGKPKKRR
RRGGRRRGGRGRNKGDADSDSKDDESPLEEVSEQVKEDMPVVAGPDGSPETAEAAAEEEK
PKKRRAPRKKKADEDTKAQASADDKSEEKPKRRPRKKKVDEAAEKADDKASEKAAKKETE
AKPKPKRATRSKKPAAGNDEGEASKTGKGDAAAKPEAETDKGAGGKAANEKTDGDGKPRR
GWWQRTFGDE
NT seq
2733 nt
NT seq
+upstream
nt +downstream
nt
atggcaacgcgcatgcttatcgatgcgcgccacacggaagaaacccgggtggcggtgctc
aaaggcaaccggattgaggaattcgatttcgagtctgctgaacacaagcagatcaaaggc
aatatctacctggccaaagtcacgagggtcgaaccgtcgctgcaggcggcgttcgtagat
ttcggaggcaaccgtcacggtttcctcgcctttagcgaaatccatcccgactattaccag
atcccgcaggcggaccgcgagaagctgctcgcggaagaggccgaagccgccgaggaagag
gcgcgtctgcgcgccgaggaagaagatcgcggcgaaatgccgggcgacgaatacgacgcc
gaggacgaaagctccggagcgctcgccgaagatctggccgaagacggcctggaggaaatc
gacacgtccgagaaggacaaggttgcgacgatcgaggaaggccagctcgacagcgacgat
gatgacgacgacgattcggacgatgacgattccgacgacgacgatgacgacgacaataac
ggcgacaacggcaagtccaggggacgccgcggacgtggtcgtggccgcggtcggcaccag
ggcaaagggaagggtcgcggtggcaagtcccgggccaaggaagtcgatgcagttcgcgcc
aagcgccaggcgctgcgtcgccggtacaagatccaggacgttatccagcgccgccaggtg
atgttggtgcaggtcgtcaaggaagagcgcggcaacaagggcgcggcgctgacgacctat
ctcagccttgccggtcgctacaccgtccttatgcccaattcgtcgcacggcggcgggatc
agccgcaagatttcgagcgccagcgatcgcaagcggttgaagcaggtcgtctccgacctg
agcctgcccaagcagatgggcctgatcgtccgcaccgccggcctcagccgcaccaagacg
gaaatcaagcgcgacttcgactacctcgcgcgtctttgggacgagatccgcgagaagacg
ctgtcttcgagcgcgccgagcctgatccattcggacagcgacctcatcaagcgcgcgatc
cgcgatatctacaatcgcgagatcgaggaagtcgtggtcgagggcgaggaaggctacaag
ctcgccaagagcttcatgaagctgctgatgccgagccatgcgcggcgggtgaaagcctat
tccgacccggtgccgctgttccagcgctacggtgcggaggaccagctgcgcgccatgtac
gatccggtcgtgcagctcaaatcgggcggctacctggtcatcaacccgaccgaggcactt
gtttcgatcgacatcaactcgggccgttccaccaaggagcacgggatcgagcagaccgcg
acagcgaccaatatcgaagcggccaaggaaatcgcccgtcagctgcgcctgcgcgacatg
gccgggctcatcgtgatcgacttcatcgacatggaatacaattccaatgtccggaaggtc
gagcgcgcgatgaaggacgcgctcaagaacgatcgggcgcgcatccaagtcggccgcatc
tccggcttcggcctgatggaaatgagccgccagcgcctgcgtaccggggttctggaagcg
accacccgcgattgcccgcattgcgacggcaccggtctcgtccgcaccgcgtccagcgcg
ggtctctcggcgttgcgcctgatcgaggacgaagcagccaagggcaagggcacggtcatc
tcgctcaaggcgagtacggaagcggcagtgtatttgctcaattccaagcgcgccgacctt
caggagatcgaagaccgctacaacgtgacggtcgaagtggtccccgaaggcgaggacgaa
ggcgccaagatgagcgtcggcagttccggtccgcgcccgtcggaagctcccaagttcgag
ccgatcgtcgatgatgacgacgacgaggaagagatcgaagacgacgcgtcggacgatgat
gacgaggacgatgacggccagccaaggaagcgtcgccgccgccgtcgcggcgggcgtggt
cgcaacaagaacaagcagaacgaccgttccgacggagatgacgacgattccgacgaggac
gattcagacgacagtgaaacgtccgacgacgacgatgacggaaagcccaagaagcgtcgc
cgccgtggcggtcgccgtcgtggcggacgtggacgcaacaagggcgatgccgacagcgat
tcgaaagacgatgaaagcccgctcgaagaggtgtccgaacaagtgaaggaagacatgccc
gtcgttgccggtccagacggttcgccggaaaccgccgaggccgctgccgaagaagaaaag
ccgaagaagcgtcgcgcgcctcgcaagaagaaggcggacgaagacaccaaggcccaggca
tccgccgacgacaagtccgaagaaaagcccaagcgccgcccgcgcaagaagaaggtcgac
gaggctgcggaaaaggcagacgacaaggcttcggaaaaggctgccaaaaaggaaaccgag
gccaagcccaagccgaaacgggccacccgcagcaagaagcctgcggccggcaacgacgaa
ggcgaggcatcgaagaccgggaaaggcgacgctgctgcgaaacctgaagcggaaacggac
aagggagccggcggcaaggctgcgaacgaaaaaaccgatggcgatgggaaaccccgccgc
ggctggtggcagcgcaccttcggtgacgaataa
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