Erythrobacter litoralis HTCC2594: ELI_13015
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Entry
ELI_13015 CDS
T00315
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
eli
Erythrobacter litoralis HTCC2594
Pathway
eli03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
eli00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ELI_13015
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
eli03021
]
ELI_13015
03019 Messenger RNA biogenesis [BR:
eli03019
]
ELI_13015
Transcription machinery [BR:
eli03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
ELI_13015
Messenger RNA biogenesis [BR:
eli03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
ELI_13015
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
OB_RNB
NACHT
Spore_III_AA
AAA_22
ATPase_2
S1CSD-TOTE-2
AAA_25
AAA
GpA_ATPase
AAA_14
Motif
Other DBs
NCBI-ProteinID:
ABC64695
UniProt:
Q2N6J6
LinkDB
All DBs
Position
2620134..2621399
Genome browser
AA seq
421 aa
AA seq
DB search
MHLRDLKEKTPAELVSMAEELGVEGASTMRRQDLLFSILRELAEDEEYEEQIMGIGTIEV
LQDGFGFLRSPEANYLAGPDDIYVSPNQIRKWGLRTGDTVEGEIRAPNEGERYFALTSLK
TVNFDEPDAVRRRTNFDNLTPLYPDQKLSLDTLDPTVKDKSARVIDIISPQGKGQRALIV
APPRTGKTVLLQNIAKAITDNHPEVFLLVLLVDERPEEVTDMQRSVKGEVISSTFDEPAN
RHVQVAEMVIEKAKRLVEHKHDVVILLDSITRLGRAYNTVVPSSGKVLTGGVDANALQRP
KRFFGAARNIEEGGSLSIIATALIDTGSRMDEVIFEEFKGTGNSEIVLDRKVADKRIFPA
LDVGKSGTRKEELLVEKDKLSKMWVLRRILMQMGTIDAMEFLLDKMKDSKTNEDFFETMN
Q
NT seq
1266 nt
NT seq
+upstream
nt +downstream
nt
atgcatctcagagatctcaaagagaaaaccccggccgagcttgtctcgatggccgaagaa
ctgggcgtcgaaggcgccagcaccatgcgccggcaggacttgctgttcagcatcctgcgc
gagcttgcagaggacgaagaatacgaagaacagatcatgggtatcggcaccatcgaggtg
ctgcaggacggcttcggcttcctgcgttcgcccgaggcgaactatctggccgggccggac
gatatctatgtttcccccaaccagatccgcaaatggggcctgcgtaccggtgacaccgtc
gaaggtgaaatccgcgcgcccaacgagggcgaacgctatttcgcgctgaccagcctgaaa
acggtcaatttcgatgagccggatgccgtgcgccgccggaccaatttcgataacctcacg
ccgctctatccggaccagaagctgtcgctcgatacgctcgacccgacggtgaaggacaag
tcggcccgcgtgatcgacatcatttcaccgcagggcaagggccagcgcgcgttgatcgtc
gccccgccgcgtacgggtaagaccgtactgctgcagaatatcgccaaggcgattaccgac
aatcaccctgaagtcttcctgctggttctgctcgtcgacgagcggcccgaggaagtcacc
gacatgcagcgcagcgtaaagggcgaagtcatttcctcgaccttcgacgagccggccaac
cgccacgtccaggtcgccgagatggtgatcgagaaggccaagcgcctcgtcgagcacaag
cacgatgtcgtcatcctgctcgattcgatcacgcgcctcggccgtgcctacaacaccgtg
gtgccgagctcgggcaaggtcctgaccggcggtgtcgatgccaatgcgctccagcgcccg
aagcgcttcttcggtgccgcgcgtaacatcgaggaaggcggctcgctctcgatcatcgcc
accgcgctgatcgataccggcagtcgcatggacgaggttatcttcgaggaattcaagggc
acgggtaacagcgaaatcgtgctcgaccgcaaggtcgccgacaagcgcatcttcccagca
ttggatgtcggcaagtccggcacccgcaaggaagagctgctggtcgagaaggacaagctc
tccaagatgtgggtcctgcgccgtatcctcatgcagatgggcacgatcgacgccatggaa
ttcttgctcgacaagatgaaggattccaagaccaacgaagacttcttcgagacgatgaac
cagtaa
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