Eubacterium limosum: B2M23_15035
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Entry
B2M23_15035 CDS
T06653
Symbol
polC
Name
(GenBank) DNA polymerase III subunit alpha
KO
K03763
DNA polymerase III subunit alpha, Gram-positive type [EC:
2.7.7.7
]
Organism
elim
Eubacterium limosum
Pathway
elim03030
DNA replication
elim03430
Mismatch repair
elim03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
elim00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
B2M23_15035 (polC)
03430 Mismatch repair
B2M23_15035 (polC)
03440 Homologous recombination
B2M23_15035 (polC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
elim03032
]
B2M23_15035 (polC)
03400 DNA repair and recombination proteins [BR:
elim03400
]
B2M23_15035 (polC)
Enzymes [BR:
elim01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
B2M23_15035 (polC)
DNA replication proteins [BR:
elim03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
B2M23_15035 (polC)
DNA repair and recombination proteins [BR:
elim03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
B2M23_15035 (polC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
RNase_T
PHP
DNA_pol3_finger
HHH_6
tRNA_anti-codon
Rv2179c-like
RNase_H_2
DEDDh_C
DUF655
DNA_pol_A_exo1
Zn_ribbon_8
Motif
Other DBs
NCBI-ProteinID:
ARD66755
UniProt:
A0AAC9QVY5
LinkDB
All DBs
Position
3220406..3224515
Genome browser
AA seq
1369 aa
AA seq
DB search
MDALNPIIHKQNDLEELIKKYGLEPQRVEVNSASQELVFTFKTRIPECDSISVQRELVDI
FDYTKSLSVIISPEAEGNNEAGAKKSVHKLMENVDYDALAKKKEDALNKRLKVIKDTPPA
KAGSGSPGKKDGKEEEARVLGVGEVVMGDKIKRPAQSMGEIDFSTGAVLDSTNIVVSGRV
FGIDSREITDKTTLFTFNITDEHGSVSCKIFARKKNVGMIKENLKKDRWFKVEGNINYDE
YSHEKVLTPKNMEVAASPVRRDNAEEKRVELHLHSQYSSMDAVSKVAKIMKQANDFGHDA
IGITDHGVLQAYPEMMSLSKKYGIKVLYGVEGYLVDDDQYIVTGEQNESFEGEFVFFDLE
TTGLIPGKDNIIEIAAVKIKNKHIVDTFSKIVNPHRPIPPFITNLTGITNQMVEDGEEEE
AAVKAFCEFCGDLILVAHNAKFDMGFMEIALNAHHLENNITYIDTLAMSRTLIPTINKHN
LKKLASYFKVDMGHHHRALDDSVCSAKIFVKLMELAQKRDVEEVAGLNGLMDVEQIIKSG
DTYHIIIYAKNQAGLKDLYKLVSEAHIHYFYRRPRIPKSLLAAHRENLIIGSACEAGELY
KAVLKNVPKNRLDEIADFYDYFEVQPLGNNEYLLRNETVHSMEELADVNRRIVELGREKG
KLVVATGDVHFVDPSDAYFREILQAGQGYKDSHEQPPLYYRSTQEMLDEFTYVDPQTAYE
LVVTNPRKVAELFDDVKPIPDGTFPPIIEGSDDEIRDMVYKKAHEMYGDPLPDIVEQRVK
RELDSIIGNGYSVLYLIAQKLVHHSLEDGYLVGSRGSVGSSLVAMLCGITEVNSLAPHYV
CPNCKHYEFFDSTKVGVGPDLPNADCPECGHPMNKDGFDIPFETFLGFEGDKEPDIDLNF
SGENQPEAHHYTEVLFGEGKVYRAGTIATLADKTAFGYVKNFFDENGVTAPRAEMERVIE
GCAGVKRTTGQHPGGVMVVPKDKDIYDFTPIQYPADDRDCGTMTTHFDYHSISGRLLKLD
ILGHDDPTMLRMLKDITGLDPQEIPLDDEKVISLFTGTSALDLKDDDFDIPLGTCGIPEF
GTNFVRQMVLDTKPTAFSDLIRISGLSHGTDVWTNNAQDLVRSGTATIKDVICTRDDIML
GLISMGLAPKESFSIMEHVRKGKGLTEDEEAYMKENNVPAWYIDSCKKIKYMFPKAHAAA
YVMMAFRIAYYKVYYPLAYYATYFSIRAKEFNLEKMTNGKETVKKTLAEIRSQGNKASNK
DQQLLTSLELALEMYCRGFGFKNVDVYESHYSEFKIVGNDLLPPLNAIDGLGDKAAMQIY
EEAQKRPFISKEDLQTRAKVNKSNIEKLEQFGCLNSLPDSNQMSFLTMM
NT seq
4110 nt
NT seq
+upstream
nt +downstream
nt
gtggacgccttgaatccgattatacataaacagaatgatttggaagaactcataaaaaaa
tacggactggagccccagcgtgtcgaggtgaactccgcgagccaggagttggtttttact
tttaaaacccgaatcccggagtgtgacagcatttcggtccagagagagcttgtggatatt
tttgactacaccaagagcctgagcgtcattatttcgccagaggctgaggggaataatgag
gctggggctaagaaatcagtccacaagctcatggaaaacgtggattacgacgctctggct
aaaaagaaagaggacgcgctgaacaagcggttaaaggtcataaaggatacgccgccggct
aaggctggcagtggctcgccggggaaaaaggatggcaaagaggaggaagcccgtgtgctg
ggcgttggcgaagttgtcatgggggacaagatcaagcgtccagcccagtccatgggagaa
attgacttcagtaccggcgcggtgctggacagcacgaacattgtggtcagcggacgtgtc
tttggtattgactccagggaaattaccgacaaaacaaccctctttacctttaacattacc
gatgaacacggcagtgtctcctgtaagatttttgcccggaagaagaatgtgggtatgatc
aaggaaaatctgaaaaaagaccgctggtttaaggttgagggaaatattaattatgacgag
tactcacacgaaaaggtgctgacacccaaaaatatggaggtagccgcatcgccggtacgc
cgtgacaacgcagaggaaaagcgtgtcgagcttcaccttcacagccagtacagctccatg
gatgcagtgagcaaggtggctaaaatcatgaaacaggccaatgactttggccacgacgcc
atcggtatcaccgaccacggtgtgcttcaggcttaccctgaaatgatgtccctgagcaaa
aaatacggtatcaaagtgctgtatggcgttgagggctatctggtggatgatgaccagtac
attgtaacaggggaacagaatgaaagctttgagggtgaatttgtattctttgaccttgag
accactggcctgattcccggtaaggacaatattattgagattgctgccgtcaaaattaaa
aacaagcatattgtggacaccttctccaaaatcgtcaatccacaccggcctattccaccg
tttatcaccaatctcaccgggattaccaatcagatggttgaggacggcgaagaggaagaa
gctgcggttaaagccttctgcgaattttgcggcgatctgatcctggtggcacacaacgca
aaatttgatatgggttttatggagattgcgctgaatgcgcaccacctggaaaacaacatc
acctatattgacacgctggcaatgtccagaacactgattccaaccatcaacaaacataat
ctcaaaaagctggcgagctattttaaagtggacatggggcaccatcaccgggcgctggat
gactcagtatgctcggcgaaaatttttgttaagctgatggagctggctcagaaacgggat
gtggaagaggtcgctgggcttaatggcctgatggatgtggaacagatcataaaatctggc
gatacctatcatattatcatctacgccaaaaaccaggcggggctgaaggatctgtacaag
ctggtttctgaggcacatatccattatttctacagacgcccgaggataccaaaatccctg
ttggcggctcaccgggaaaatctgattattggcagcgcctgcgaggctggagagctgtac
aaggcagtgctgaaaaatgtgcccaaaaaccgattggatgaaatcgctgatttttatgac
tactttgaggtacagcctctgggaaacaatgaatacctgcttcggaatgagaccgtccac
tccatggaagagctggcagatgttaaccggcggattgtcgagcttgggcgggaaaagggc
aagcttgtggttgccaccggggacgtccattttgtggaccccagtgacgcctatttcaga
gagattctgcaggccggccagggctacaaagattcccatgagcagccgccgctttactat
cgctcgacccaggaaatgctggacgaatttacctatgtagacccgcagaccgcttatgag
ctggtcgttaccaatccgcgcaaggtggcagaactgtttgacgatgtgaagcccataccc
gatggcaccttcccgcccatcattgagggctcggatgacgagatccgggatatggtttat
aaaaaggcccatgagatgtacggtgacccgctgcccgacattgtggaacagcgcgtgaag
cgtgagctggactccattatcggcaacggatattcggtcctgtacctgatcgcccagaag
ctggtacaccattctctggaggatggttacctggtaggctccagaggatcggtcggctcg
tcgctggttgccatgctttgtgggatcacagaggttaactctctggcgccccactatgtc
tgcccgaactgcaagcattatgagttctttgacagtacaaaggtgggggtagggccagac
ctccccaacgctgactgtccagaatgcggccatcccatgaataaggacggctttgatatt
ccttttgaaaccttccttggctttgagggggataaggagcccgatattgaccttaacttc
tcgggcgaaaaccagccggaggcccatcattacaccgaggtgctctttggcgagggaaag
gtctaccgcgcgggaaccattgcgacactggcagataaaacagcctttggctatgtgaag
aatttctttgatgaaaatggcgttactgcgcccagagcagagatggaacgtgtgattgaa
ggctgtgcgggcgttaagcgcaccacaggccagcatcccggcggggtaatggttgtgcca
aaggataaggatatctatgactttacaccgatccagtatccagccgatgaccgggactgt
ggcaccatgaccacccatttcgattaccactccatttccgggcgcctcctgaagctcgat
attctgggtcatgatgacccgaccatgctccgcatgctcaaggacatcacaggacttgac
ccgcaggagattccgctggacgacgaaaaggtcatcagcctgttcacaggcaccagcgcc
ctggatctgaaagatgatgattttgacatccccctcggtacctgcggtatccctgagttt
gggaccaactttgtccgtcagatggtgctggacaccaagcccactgccttttcagacctg
atccgtatttccggcttatcccacggcacagacgtctggaccaacaatgcgcaggacctt
gtgcgttccgggactgcgaccatcaaggacgttatctgtacccgtgacgatattatgctc
ggactgatctcaatgggactggcgcccaaggaatccttcagcattatggagcatgtccgt
aaagggaagggcctgacagaggatgaggaagcctatatgaaggaaaataatgtaccggcc
tggtatattgattcctgtaaaaaaatcaagtacatgttccctaaggcccatgcggcagcc
tatgttatgatggccttccgcatcgcctactacaaggtttactatccgctggcctactac
gccacctatttcagtatccgcgccaaggaatttaatctggaaaagatgaccaacggcaag
gaaacggtcaaaaaaacactggcggaaattcgctctcaggggaacaaggccagcaacaag
gatcagcagctcctgacttcgctggagctggcgctggaaatgtactgccgtggttttggc
tttaaaaatgtggatgtgtacgagtcccactacagcgagttcaaaattgtcggcaatgat
ctgctgccaccgctcaacgccattgatggcctgggtgataaggcggccatgcagatttat
gaggaagcccaaaagcggcccttcatctccaaggaggatctgcagaccagggccaaggtc
aataaatccaatatcgaaaagctcgagcagtttggctgcctcaacagcctgccagactct
aatcagatgagctttttaaccatgatgtaa
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