Elioraea tepida: KO353_05395
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Entry
KO353_05395 CDS
T07340
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
elio
Elioraea tepida
Pathway
elio02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
elio00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
KO353_05395 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
elio03021
]
KO353_05395 (rpoD)
Transcription machinery [BR:
elio03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
KO353_05395 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r3
Sigma70_r1_1
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
TelA
DASH_Hsk3
AAA_13
DUF6444
GvpK
Sec10_N
Motif
Other DBs
NCBI-ProteinID:
QXM25643
UniProt:
A0A975YKL9
LinkDB
All DBs
Position
complement(1122281..1124206)
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AA seq
641 aa
AA seq
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MAKPASVAPTDQAADDLADGALLDVQSIAVKKLIARGSERGYVTYDEVNAALPPGEVSSE
QIEDTMAMLSERGINVVESEEAEDLEAQPAAKAESEDDEGSGGNIDEAEMGRTDDPVRMY
LREMGSVELLSREGEIAIAKRIEAGREMMIGGLCESPLTFRAIVAWHDALQAGQMLLRDI
IDLEATNAGGAPGEAGALPADEPADEPGGEDGFDDDEGAQLSLSALEEKLKPEVLKTFEE
IAQSYKKLAKLQEARLKTLSEGGQPSRQAEAKYEKAKEEVTRLVEKVHLNNAKIEQLVAQ
LRELNQRLNTLEGQLLRLADQAKIKREDFLAQYRGHELDPGWLERVAALPGKGWKTFATK
HGAEVAEIRARIAAIANEVQLPVGEFRRVVQTVQKGERDAARAKKEMIEANLRLVISIAK
KYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRI
PVHMIETINKLVRTSRQMLHEIGREPTPEELAEKLGMPLEKVRKVLKIAKEPISLETPIG
DEEDSHLGDFIEDKNAVIPLDAAIQANLREATTRVLSTLTPREERVLRMRFGIGMNTDHT
LEEVGQQFNVTRERIRQIEAKALRKLKHPSRSRKLRSFLED
NT seq
1926 nt
NT seq
+upstream
nt +downstream
nt
atggcgaaacccgcatccgttgccccgaccgaccaggcggcagacgatctcgccgatggc
gccctgctcgatgtccagtcgatcgccgtcaagaagctgatcgcccgcggcagcgagcgc
ggctacgtcacctatgacgaggtgaacgccgccctcccgcccggcgaggtgtcctccgag
cagatcgaggacacgatggcgatgctgtccgagcgcggcatcaacgtcgtcgagagcgag
gaggccgaggacctcgaggctcagcccgcggccaaggccgagtcggaggacgacgaaggc
tccggcggcaatatcgacgaggcggagatgggccgcaccgacgacccggtgcggatgtat
ctgcgcgagatggggtcggtggagcttctctcgcgcgagggcgagatcgcgatcgccaaa
cgcatcgaggcggggcgcgagatgatgatcggcgggctgtgcgagagcccgctcaccttc
cgcgccatcgtcgcctggcatgacgcgctccaggctgggcagatgctcttgcgcgacatc
atcgacctcgaggcgaccaacgcgggcggcgccccgggcgaggcgggcgccctgcccgcc
gacgagcccgcggacgagcccggcggcgaggacgggttcgatgacgacgagggggcgcag
ctgtcgctctcggcgctcgaggagaagctcaagcccgaggttctcaagaccttcgaggag
atcgcccagagctataagaagctcgccaagctccaggaggcgcggctcaagaccctctcc
gagggcggccagccctcgcgccaggcggaggcgaagtacgagaaggccaaggaggaggtc
acccgtctcgtcgagaaggtgcacctcaacaacgccaagatcgagcagctggtggcgcag
ctgcgcgagctgaaccagcggctcaacacgctggagggccagctgttgcgccttgccgac
caggcgaagatcaagcgcgaggacttcctcgcccagtatcgcggccacgagctcgacccg
ggctggctcgagcgcgtcgccgcgcttcccggcaaggggtggaagaccttcgcgaccaag
cacggcgccgaggtggccgagatccgcgcccggatcgccgcgatcgcgaacgaggtgcag
ctccccgtgggcgagttccgccgcgtggttcagacggtgcagaagggcgagcgcgatgcc
gcccgggcgaagaaggagatgatcgaggccaatctccgcctcgtgatctcgatcgccaag
aaatacaccaaccgcgggcttcagttcctcgacctgatccaggagggcaacatcggcctg
atgaaggcggtggacaagttcgagtatcgccgcggctacaaattctcgacctacgccacc
tggtggatacgccaggcgatcacccgctcgatcgccgaccaggcgcgcacgatccgaatc
cccgtgcacatgatcgagacgatcaacaagctcgtgcgcacctcgcgccagatgctgcac
gagatcggccgcgagccgacaccggaggagctcgccgagaagctcggcatgccgctcgag
aaggtgcgcaaggtgctgaagatcgccaaggagccgatctcgctcgagacgccgatcggc
gacgaggaggacagccacctcggcgacttcatcgaggacaagaacgcggtgattccgctc
gacgccgcgatccaggcgaacctccgcgaggcgacgacgcgtgtgctcagcacgctgacg
ccgcgcgaggagcgcgtgctccggatgcgtttcggcatcggcatgaacaccgaccatacg
ctcgaggaggtcgggcaacagttcaacgtaacgcgcgagcgcatccgccagatcgaggcg
aaggccctgcgcaagctcaagcacccgagccggtcgcggaaactccggagtttcctcgag
gattga
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