Elioraea tepida: KO353_12120
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Entry
KO353_12120 CDS
T07340
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
elio
Elioraea tepida
Pathway
elio03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
elio00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
KO353_12120 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
elio03021
]
KO353_12120 (rpoC)
03400 DNA repair and recombination proteins [BR:
elio03400
]
KO353_12120 (rpoC)
Enzymes [BR:
elio01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
KO353_12120 (rpoC)
Transcription machinery [BR:
elio03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
KO353_12120 (rpoC)
DNA repair and recombination proteins [BR:
elio03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
KO353_12120 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
Biotin_lipoyl_2
Apocytochr_F_C
Motif
Other DBs
NCBI-ProteinID:
QXM24019
UniProt:
A0A975U1N0
LinkDB
All DBs
Position
2540370..2544536
Genome browser
AA seq
1388 aa
AA seq
DB search
MNELMKILGAQPGTLTFDQIRISIASPEQIRSWSYGEIKKPETINYRTFKPERDGLFCAR
IFGPIKDYECLCGKYKRMKFRGIICEKCGVEVTLAKVRRERMGHIELASPVAHIWFLKSL
PSRIGLMIDMTLKDIEKILYFESYVVLEPGLTDLKLYQLISEEQYQAKVDEFGEDAFSVG
IGAEALKQILAGLDLNAEKTKLRLELKETTSEAKRKKLVKRLKLIEAFLESGTRPEWMIL
DVVPVIPPELRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLIELRAPDIIVRNEKRML
QEAVDALFDNGRRGRPITGANKRPLKSLSDMLKGKQGRFRQNLLGKRVDYSGRSVIVVGP
ELKLHQCGLPKKMALELFKPFIYSKLEKYNLAATIKAAKRMVEKERPEVWDILEEVIREH
PVLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCTAFNADFDGDQMAVHVPLSLEAQLE
ARVLMMSTNNILSPANGKPIIVPSQDIVLGLYYLSLETPEFKAVADDQAPAFTGMGEIEQ
ALEAKAITLHSKIRARREAVDRDGKTVTMRVVTTPGRMMIGALLPKHPNLPYDLVNRQLT
KRTISDVIDAVYRHCGQKETVIFADRLMGLGFRHAARAGISFGKDDLIIPAEKQALIAKT
AAEVKEFESQYQEGLITWGERYNKVVDAWTRCAEEVAEAMMKEIRRQEVGRPINSVWMMS
HSGARGSPAQMRQLAGMRGLMAKPSGEIIETPILSNFKEGLTVLEYFNSTHGARKGLADT
ALKTANSGYLTRRLVDVAQDCIVVEEDCGTEKGITVRPVLDGGEVVSSLSERILGRTAAR
DVQDPITGAVIVPRNALIGEAEADAIEQAGVDSVYIRSVLTCETRVGICAKCYGRDLARG
TPVNVGEAVGVIAAQSIGEPGTQLTMRTFHIGGAAQRGAEQSQVEAATDGIVAVKNRNVV
LNSQGTPIVMSRNCELLLLDDQRRERARYRVPYGARLLADEGAQVARGQKLAEWDPYTLP
VITERSGIVDYVDLIEGVTVVERVDEATGLSSKVVVDWKQQAKGADLRPRIVLRDEKGEL
VKLPNGTEARYFLSVDSVLSVDNGARVNAGDVLARIPRESSKTRDITGGLPRVAELFEAR
RPKDHAIISEIDGRVEFGKDYKAKRRIVVKNDETGEEREYLIPKGKHVSVQEGDYVRIGD
PLVDGPRVPHDILKVLGVEALADYLVNEIQDVYRLQGVKINDKHIEVIVRQMLQKVEIQD
PGDTTFLVGEQVDRVDFEAENEKRLAEGERPATAFPVLQGITKASLQTHSFISAASFQET
TRVLTEAAVAGKVDPLAGLKENVIVGRLIPAGTGNVMMRLKALAAQKDRGRVQGGAPQLP
DAGAVAAE
NT seq
4167 nt
NT seq
+upstream
nt +downstream
nt
atgaacgagctgatgaagatcctgggcgcgcagcccggcacgctcaccttcgaccagatc
cggatctcgatcgcgagccccgagcagatccgctcgtggtcctacggcgagatcaagaag
ccggagacgatcaactaccgcacgttcaagcccgaacgcgacgggctgttctgcgcccgc
atcttcggaccgatcaaagactacgagtgcctttgcggcaagtacaagcggatgaagttc
cgcggaatcatctgcgagaagtgcggtgtggaggtcacgctcgccaaggtgcgccgcgag
cgaatggggcacatcgagctcgcctcgccggtggcgcacatctggttcctcaagtcgttg
ccctcgcgcatcggcttgatgatcgacatgacgctgaaggacatcgagaagatcctctat
ttcgagagctacgtcgtgctcgagccggggctgaccgacctcaagctctaccagctgatc
tccgaggagcagtatcaggcgaaggtggacgagttcggcgaggatgcgttctcggtcggc
atcggtgcggaggcgctgaagcagatcctcgccggtctcgacctcaacgccgagaagacg
aagctccggctcgagctcaaggagacgacgtcggaggccaagcggaagaagctcgtcaag
cggctgaagctgatcgaggcctttctcgagagcggcacgcggcccgagtggatgatcctc
gacgtcgtgccggtgatcccgcccgagctgaggccgctcgtgccgctcgatggcggccga
ttcgcgacctccgacctcaacgacctctaccggcgcgtgatcaaccgcaacaaccggctg
aagcgcctgattgagctgcgcgcgcccgacatcatcgtgcgcaatgagaagcggatgttg
caggaggcggtcgatgccctgttcgacaacggccgccgcggccggccgatcacgggggcg
aacaagcggccgctgaagtcgctctccgacatgctcaagggcaagcaggggcggttccgc
cagaacctgcttggcaagcgggtcgactactccggccggtcggtgatcgtggtggggccg
gagctcaagctgcaccagtgcggcctgccgaagaagatggcgcttgagctgttcaagccg
ttcatctactcgaagctcgagaagtacaacctcgccgccaccatcaaggcggccaagcgc
atggtggagaaggagcgtcccgaggtgtgggacatcctcgaggaggtgatccgcgagcac
ccggtgctgctcaaccgcgcgccgacgctgcaccgcctgggcatccaggctttcgagccg
gtgctgattgagggcaaggcgatccagctccacccgctcgtctgcaccgccttcaacgcg
gatttcgacggcgaccagatggccgtgcacgtgccgctctcgctcgaggcgcagctcgag
gcgcgcgtgctgatgatgagcacgaacaacatcctctccccggccaacggcaagccgatc
atcgtgccgagccaggacatcgtgctcggtctctactacctctcgctcgagacgcccgag
ttcaaggcggtcgccgacgaccaggcccccgccttcaccggcatgggcgagatcgagcag
gcgctcgaggcgaaggcgatcacgctgcactcgaagatccgtgcccgccgcgaggcagtg
gatcgcgacggcaagacagtgacgatgcgcgtggtgacaacgcccgggcggatgatgatc
ggcgcattgctgccgaagcacccgaacctgccctatgaccttgtcaaccggcagctgacg
aagcggacgatctcggacgtgatcgacgccgtctatcgccactgcgggcagaaggagacg
gtgatcttcgccgaccggctgatgggccttgggttccggcacgccgcccgcgccggcatc
agcttcggcaaggacgacctgatcatcccggccgagaagcaggcgctgatcgccaagacc
gccgccgaggtgaaggaattcgaaagccagtaccaggaagggctgatcacctggggcgag
cgctacaacaaggtggtcgatgcctggacgcgctgcgccgaggaggtcgccgaggcgatg
atgaaggagatccgccggcaggaggtgggccggccgatcaacagcgtctggatgatgagc
cattccggcgcgcgcggcagccccgcacagatgcgccagctcgccggcatgcgcgggctg
atggccaagccctcgggcgagatcatcgagacgccgatcctgtcgaacttcaaggagggg
ctcaccgtgctcgagtacttcaactcgacgcacggggcgcgcaagggcctcgccgacacg
gcgctcaagaccgccaactcgggctatctcacgcgccgcctcgtcgacgtcgcgcaggac
tgcatcgtcgtcgaggaggattgcggcaccgagaaggggatcacggtgcgcccggtgctc
gacggtggggaggtcgtctcgtctctgtcggagcggatcctcgggcggaccgcggcccgg
gacgtgcaggacccgatcaccggcgcggtgatcgttccgcgcaacgccctgatcggcgag
gcggaggcggatgccatcgagcaggccggtgtggacagcgtctacatccgctcggtgctt
acctgcgagacgcgggtcggcatctgcgcgaagtgctacggccgcgacctcgcgcgcggc
acgccggtgaatgtcggcgaggcggtcggcgtgatcgccgcgcagtcgatcggcgagccg
ggaacgcagctcacgatgcgcaccttccacatcggcggcgccgcccagcgcggcgccgag
cagagccaggtcgaggcagcgacggacggtatcgttgcggtaaagaatcgaaacgtcgtg
ctgaactctcaaggcacgcccattgtgatgagccgcaactgcgagcttctcctgctcgac
gaccagcgtcgggaacgcgcccgctaccgtgtgccctacggtgcgcggctgctcgccgac
gagggggcgcaggtcgcgcgcggccagaagctcgccgagtgggacccctacacgctgccc
gtgatcaccgagcgctcaggcatcgtcgactatgtcgatctgatcgagggcgtgacggtg
gtcgagcgtgtcgacgaggcaaccggtctctcgagcaaggtggtggtcgactggaagcag
caagcgaagggggcggatctgcgcccgcgcatcgtgcttcgcgacgagaagggcgagctc
gtcaagctgccgaacggcacggaggcgcgctacttcctctcggtcgattcggtcctctcg
gtcgacaatggcgcgcgggtgaatgcgggcgacgtgctcgcgcgcatcccgcgcgagagc
tcgaagacgcgtgacatcaccggcggcttgccgcgcgttgcggagctgttcgaggcgcgc
cggccgaaggaccatgcgatcatcagcgagatcgacggccgggtggagttcggcaaggac
tacaaggcgaagcggcggatcgtcgtgaagaacgacgagaccggcgaggagcgcgagtat
ctcatcccgaagggcaagcacgtctccgtgcaggaaggggactatgtgcggatcggtgac
ccgctggtcgacggcccccgcgtgccgcacgacatcctcaaggtgctcggggtcgaggcg
ctcgcggattatctcgtcaacgaaatccaggatgtctatcgcctgcagggcgtgaagatc
aacgacaagcacatcgaggtgatcgttcgccagatgctgcagaaggtcgagatccaggac
cccggcgacaccacgttcctggtgggggaacaggtggatcgcgtcgacttcgaggctgag
aacgagaagcggctggcggagggcgagcgtcccgcgaccgccttccccgtcctgcagggg
atcaccaaggcatcgctgcagacgcacagcttcatctcggccgcgtccttccaggagacc
acgcgggtgctcactgaggcggcggtggcgggcaaggtggatcccctcgccgggctgaag
gaaaacgtgatcgtcgggcggctgatcccggcgggcacgggcaacgtgatgatgcgtctc
aaggcgcttgcggcgcagaaggaccgtggcagggtgcagggtggtgcgccgcaactgccg
gatgccggcgcggtcgcggccgaatag
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