Elizabethkingia sp. M8: JCR23_05120
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Entry
JCR23_05120 CDS
T09429
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
eliz
Elizabethkingia sp. M8
Pathway
eliz03030
DNA replication
eliz03430
Mismatch repair
eliz03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
eliz00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
JCR23_05120 (dnaE)
03430 Mismatch repair
JCR23_05120 (dnaE)
03440 Homologous recombination
JCR23_05120 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
eliz03032
]
JCR23_05120 (dnaE)
03400 DNA repair and recombination proteins [BR:
eliz03400
]
JCR23_05120 (dnaE)
Enzymes [BR:
eliz01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
JCR23_05120 (dnaE)
DNA replication proteins [BR:
eliz03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
JCR23_05120 (dnaE)
DNA repair and recombination proteins [BR:
eliz03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
JCR23_05120 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
RNase_T
tRNA_anti-codon
Motif
Other DBs
NCBI-ProteinID:
QQM27824
LinkDB
All DBs
Position
complement(1129595..1134256)
Genome browser
AA seq
1553 aa
AA seq
DB search
MFLIFDTETTGLPRNFNAPLTDFDNWPRMVQIAWQLHDEHGNLIENQDYIIKPEGYDIPF
NAYRIHGISTEMAMREGRDLKEVLNEFKEVLKKTKVVAGHNVSFDYSIVGSEFLRKELED
NLKDKPIVDTMEFGTNVCQLPGGRGGRFKSPKLEELSEKLFGHKFDEAHNAAADVNATAQ
AFFEMMRLEVYPLDKIFFDDVQMKAFKDHNPDVFKPFDIVIRRQVADSKKRKKTVDFGDT
DDIDIGNFFHFYSHSIYSTLQATSGLADLVSVAEKNNFPAVGLVDLGNMMGAFKFIDEVE
KYNGNLKQKKQEAEAAEEKPDNYDEINSAKFLTPILGLELYISERYQQRQFTKDDPDRRT
QVVLLAKNFEGYKNLAKLSSIGFKEGFYAGVPRISRALISQYKDNLIALTGGLSCEVPST
ILELGEQRGEEVFQWWLNEFGDDFYVQIQNHQMDEEDYVNEILLKFADKHNVKILAQNET
YYTRKSDAKIQDIVACIKDGEKLSTPVGKGFGKRKGLNSEQFYLKNSEEVKQAFQMYPDA
FMAYDEFLNKFESYKLKRDVLLPKFDIPEEFQDAEDLNDGGKRGEMNFLRHLTYEGARKK
YEEITDEIRERLDFELDIIAKTGYPGYFLIVQDFCNEAKNMGVSVGPGRGSAAGSAVAYC
IGITNVDPIKYDLLFERFLNPERISMPDIDIDFDDEGRDRIIKWVIDKYGQNQVAQIITY
SVLGGKSAIKDAGRVLDVSIPETNNIAKLIPNTPGMNIAKVMKSDLKKFKPEDLPLVDEI
KGILNNPDDGRFNVLDSAYKMEGCIRNTGIHACGVIITPEDISNLVPVTIAAKDADILVS
QFDNSVAESAGLLKMDFLGLRTLTIIKDAVKLIKNRHGIEIIPDDIPLDDAKTYQLFKEG
RTIGIFQYESAGMQKYMRELKPTVFADLIAMNALYRPGPIKYIPNFINRKHGLEEIIYDL
PETQEYLQETYGITVYQEQVMLLSQKLANFTKGEADTLRKAMGKKQKAVLDKMFPKFIEG
GKKNNLDEEKLHKIWKDWEAFAEYAFNKSHSTCYAYIAYHTAYLKANYPAEYMASVMSNN
INNTKQITLFMEDCQAMGVDVLGPSVNESEYEFAVNEKGQIRFGLGAIKGIGEGPSEAIC
KERERSGRFTDIYSFFERIPSSQLNKRVVESLVFAGAFDELDSYHRAQYFDVDTAGRTNI
ERLLRYSSSFQDSKNSVENSLFADFADEVQIERPKINPAPEWQNMHKLNREKEAIGFYLS
AHPLDEFYYQYKFIQGALSKKSVVSKKLDEELEKAPENEKADEQDDKDEVSTDIDFPADM
LEVDGDEIIEEVVKKVDPRGKFNFLNLDEVDPYRDFVLQRDFSNLTPAEISKLKEKKFRS
KGNDNSKEYMVSGLITEYVIRDGYESGTKIAFITLEDYTGSYSFRLNDKDYMRLREKLGE
HRFVIFKIKFAPSKDFDRLYVNVTEVIDLKEAFDRYASQLSLVVPFNEVDQDDIEFFRRT
FAHNKGVHKLSFYLKDPVENHFVELNSMQTSVDISAETIKLLHEYKKYELFLN
NT seq
4662 nt
NT seq
+upstream
nt +downstream
nt
atgttcttgatttttgatacagaaacaactggtttaccccgaaattttaatgctccttta
actgacttcgacaactggccgcgcatggttcagattgcatggcagttacacgacgagcat
ggaaatcttatagagaatcaggattatattataaagcccgaaggctacgatattccgttt
aacgcataccgtattcacgggatatctacagagatggcgatgcgtgaaggtcgcgatctt
aaagaggtacttaatgaatttaaggaagtactgaaaaaaacaaaggtagtagcagggcac
aatgtgagctttgactacagtattgtgggatctgagtttcttcggaaagagctggaagat
aatctgaaagataaacctatcgtagatacgatggagtttggtaccaatgtttgtcagctt
ccgggtggtagaggtggtagattcaaatctcctaaactggaagaactttccgaaaagtta
ttcggacacaaattcgatgaagcccacaatgctgctgccgatgtaaatgctacggcacag
gcattctttgaaatgatgagactggaagtttatccactggataaaatcttcttcgatgat
gtacagatgaaggctttcaaggatcataatcctgatgtcttcaaacctttcgatattgtc
atccgcagacaggttgccgattccaaaaaaaggaaaaaaactgttgactttggagataca
gacgatattgatatcggaaactttttccatttttatagtcacagtatttattccacttta
caggcaacatccggtttggctgatttagtttccgtagcggaaaagaataactttccggcg
gtaggtcttgtagatcttgggaacatgatgggagcttttaagtttattgatgaggttgag
aaatataacggaaatcttaagcagaaaaagcaggaagctgaagccgctgaggaaaagcca
gacaactatgatgaaattaacagtgctaaatttcttacgcctattttaggtttagaactt
tatatctctgaacgttatcaacaaagacagtttaccaaagatgatccggacagaagaact
caggttgtactcttagctaaaaactttgaaggttataaaaatctggcaaaactttcttct
ataggttttaaagaaggtttttatgccggagttccaaggattagccgtgcactgatttca
caatataaagacaatcttattgcgttgacaggaggtttgtcctgcgaggtgccttctaca
attctggaattgggggagcaaagaggagaagaagttttccaatggtggctgaatgaattt
ggtgatgatttctacgtacaaattcagaatcatcagatggatgaggaagattatgttaat
gaaatccttctcaaatttgcagataagcataacgttaaaatactggcacagaacgaaact
tattatacccgaaaatcggatgccaaaatccaggatattgtagcctgtattaaggatggt
gaaaagctgtcgacacccgtaggcaaaggattcggaaaaagaaaaggactgaatagtgag
cagttttatctgaagaatagtgaagaagttaagcaggcttttcagatgtatccggatgct
ttcatggcttacgatgagttcctgaataagtttgaatcttataaactaaaaagggatgtt
ctcctgcctaagtttgatattcctgaggaattccaggatgctgaagacctgaatgatgga
gggaagaggggagagatgaatttcctgagacatcttacctatgaaggcgctaggaaaaaa
tatgaagaaattaccgatgaaataagggaaagactggattttgaactggatattattgct
aaaacagggtatccgggatatttcctaattgtacaggatttctgtaacgaagccaaaaat
atgggtgtttcggtaggcccgggaaggggatccgcagccggatctgcagtcgcctactgt
ataggaattactaatgtagatcctattaagtatgatctcctttttgagcgttttcttaac
cctgaaaggatctctatgcccgatatcgatatcgactttgacgatgaaggacgtgacagg
attattaaatgggtaatcgataaatatggacaaaatcaggtagcacagattattacctac
tctgtattgggaggtaaatcggctattaaagatgcgggaagggtactggatgtatctatt
cccgaaaccaacaatattgcaaagctaattccgaatacaccagggatgaacattgcaaaa
gtgatgaagtccgatctgaagaaattcaaaccagaagatcttccgctggttgatgaaata
aaaggaattctgaataacccggatgatggtcgtttcaatgtactggacagtgcttataaa
atggaaggctgtatccgaaacacaggtatccatgcctgtggggtaattattacaccggaa
gatatcagtaatctggttccggtaacaattgctgcaaaagatgctgatattttggtatct
cagtttgacaactcggtggcggaaagtgccggattgctgaaaatggactttttggggctc
agaacgcttaccattattaaagatgctgtaaagctcattaagaacagacacggaatagaa
attattccggatgatataccattggatgatgcgaagacttatcaactctttaaagaggga
cgtacgattggtatattccagtatgaatctgccggtatgcaaaaatacatgcgtgagctg
aagcctacggtatttgccgatcttattgcaatgaatgcattgtaccgtccgggacctatt
aaatatattccaaactttatcaatcgtaaacacggtctggaggaaatcatatatgatctt
ccggaaacacaggaatatcttcaggaaacctatggaattacagtatatcaggagcaggta
atgctactgtctcagaagctggcgaactttactaaaggtgaggccgatacgctgagaaaa
gcaatgggtaaaaagcaaaaagcggtactggataaaatgttcccaaaatttattgaagga
ggaaagaaaaataatctggacgaagagaagcttcataaaatctggaaagactgggaagca
tttgctgaatatgcattcaacaaatctcactctacatgttatgcttatattgcttaccac
acggcctatttgaaggcaaattatccggctgagtatatggcgagtgtaatgagtaataac
attaacaataccaagcagattacattgttcatggaagattgccaggcaatgggagtggat
gttttgggaccatctgttaatgaatctgaatatgaatttgctgtaaacgagaaagggcag
atacgttttgggcttggtgctataaaaggaataggagaaggaccatcggaagctatttgt
aaagaaagagaaagaagcggacgatttacagatatttacagttttttcgaaagaattcct
tcgtcacaactaaataaaagagtagtggaaagccttgtatttgccggagctttcgacgaa
ttagattcttatcaccgtgctcagtattttgatgttgatacagcgggaaggacgaatatt
gaacggttactaagatacagcagcagttttcaggatagtaaaaattcggtagagaactct
ctgtttgcagattttgcagatgaggttcagattgaaagaccaaaaataaatccggctcct
gagtggcagaatatgcataagcttaacagggaaaaagaagccatcggtttctatctttct
gcgcatccgttggatgaattctattatcagtataaatttattcagggagcactgagtaaa
aaatcggtggttagcaaaaagctggatgaagaactggaaaaagcccctgaaaatgaaaaa
gcagatgagcaggatgataaggatgaagtgtctacagatattgatttccctgcagacatg
ctggaggtagacggagatgaaatcattgaagaggttgtaaaaaaagtagatccaagagga
aaatttaatttcctgaatctggatgaggtagacccttacagggattttgtacttcaaagg
gatttttccaatcttacaccggcagagatttcaaagctaaaagagaaaaaattccgaagt
aaagggaatgataattccaaagaatatatggtctccggtcttattacggaatatgtaata
cgagacggttacgaaagcggaaccaagattgcctttattacactggaagattatacaggt
tcttattctttcaggctgaatgataaagattatatgcgtttgagagaaaagcttggagag
cacagatttgtgatttttaagatcaaatttgcaccttccaaagattttgacaggttatat
gtaaatgttactgaagttattgacctgaaagaagcttttgatcgctatgccagtcaactt
tcattagtggtgccgtttaatgaagtggatcaggatgatatagagtttttcagacgcact
tttgcccacaataaaggggtacacaaactaagtttctatctgaaagatcctgtagaaaat
cactttgtagagctcaattcaatgcagacctctgtagatataagtgctgagacgataaag
cttctgcacgagtataagaaatatgaattattcttaaattaa
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