Elizabethkingia sp. M8: JCR23_05815
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Entry
JCR23_05815 CDS
T09429
Name
(GenBank) polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
eliz
Elizabethkingia sp. M8
Pathway
eliz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
eliz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
JCR23_05815
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
eliz03019
]
JCR23_05815
03016 Transfer RNA biogenesis [BR:
eliz03016
]
JCR23_05815
Enzymes [BR:
eliz01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
JCR23_05815
Messenger RNA biogenesis [BR:
eliz03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
JCR23_05815
Transfer RNA biogenesis [BR:
eliz03016
]
Prokaryotic type
tRNA degradation factors
JCR23_05815
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
S1
PNPase
KH_1
S1_2
KH-I_KHDC4-BBP
Motif
Other DBs
NCBI-ProteinID:
QQM27947
LinkDB
All DBs
Position
complement(1287519..1289708)
Genome browser
AA seq
729 aa
AA seq
DB search
MSIPQAITEKIVLKDGREITIETGKLAKQADGSVVVRMGDTMLLATVVANKEANPGVDFL
PLTVDYREKFYAGGRIPGNFFRRETKPSDDEVLTMRLVDRVLRPLFPEDFHAEVQVMISL
ISYDKEVMPEALAGLAASAAIAITDIPFNGPMSEVRVVRIDGKLSVNPSYENLLKADIDI
MVGATKDSIVMVEGEMQEISEQEMLEAITFAHEEIKVQIEAQERLAAKVGKAFPKREYSH
EEHDEEIREKVWKECYDKVYEVAKTPSNKEERGEKFKAVLEEFLAQYTDEEELARVTPFV
KVYYHDVEKEAMRQMILNENIRLDGRDPKTIRPIWSEVDYLPGAHGSAVFTRGETQSLTA
VTLGSSKDANMVDSVITQHDEKFFLHYNFPPFSTGEARPLRGTSRREVGHGNLAQRALAN
VIPAEVPYTIRIVSDILESNGSSSMATVCAGTLALMDAGVQIKQPVSGIAMGLITDPKSG
KWTVLSDILGDEDHLGDMDFKVTGSENGITACQMDIKIQGLSMDIMEKALMQAREGRLHI
LGKILETIDAPRTDVKPHAPKMEMLEISKDFIGAIIGPGGKNIQQLQKDTDTVISIEEIG
EIGRVEIAGTNREKINEAIARINDITFVPVVGEVYKGKVVKVMDFGAFVQLKKGTEGLLH
ISEIEWKRLDTVPYKEGDEVEVKFMGYDDRKKMKLSRKVLLPRPPKPEGKPKAEAVEAKT
EGDKPAEQA
NT seq
2190 nt
NT seq
+upstream
nt +downstream
nt
atgagtatacctcaagcaattacagaaaaaattgtactaaaagatggtcgcgaaattacc
atcgaaaccggaaaacttgctaagcaggcagacggttcagtagtcgttagaatgggcgac
actatgttattggctacagttgtagcaaataaagaagctaatccgggagtggattttctt
ccccttacagtagattacagggagaaattttatgccggaggacgtattccgggtaacttc
ttcagaagagagactaaaccatctgatgatgaagttcttaccatgcgtttggtagacaga
gttttacgtccgctcttccctgaagatttccacgcagaagttcaggtaatgatttcactt
atttcttatgataaagaagtaatgccggaagctcttgctggtcttgcagcatctgcagca
atcgctattacagatattcctttcaacggaccaatgtctgaagtaagagtagtaagaatt
gacggaaaactttctgttaatccaagctatgagaacttattgaaagctgatatcgacatt
atggtaggagcaacaaaagattctattgtaatggtagaaggagagatgcaggagatttct
gagcaggaaatgttagaagcaattacatttgcacatgaagaaattaaagttcagatcgaa
gctcaggagagattagctgcaaaagtaggaaaagctttccctaagagagaatatagccac
gaagaacacgatgaagaaattcgtgaaaaagtatggaaagagtgctatgacaaagtatat
gaagtagcaaaaactccatctaataaagaagaaagaggtgagaaattcaaagctgtttta
gaagaatttttagctcaatatacagacgaagaagaattagcgcgtgtaacaccttttgtt
aaagtatactaccacgatgtagaaaaagaggcaatgcgtcagatgattcttaacgaaaat
atccgtctggatggtcgtgatcctaaaactatccgtccaatctggtctgaagtagactac
ctaccgggtgctcacggttcagcagtgtttacaagaggggaaactcagtctctgacagca
gtaactttaggttcttctaaagatgctaatatggtagacagtgtaattacacaacacgat
gaaaaattctttttacattataacttcccaccattctctacaggtgaagcaagaccctta
agaggtacttccagaagagaagttggtcacggtaaccttgctcagagagcattggctaac
gttatcccggcagaagttccttatactatccgtattgtttccgatattttagaatccaat
ggttcttcttctatggcaactgtttgtgctggtacattagcattaatggatgcaggtgtc
cagattaagcagccggtttctggtattgcaatgggattgattactgatcctaaatctggt
aagtggacagttctttctgatatcttaggagatgaagaccacttaggagatatggacttt
aaagtaacaggttctgaaaacggaattactgcttgtcagatggatattaaaatccaggga
ctttctatggatatcatggaaaaagctctaatgcaagctagagaagggcgtcttcatatt
cttggtaaaatccttgaaacaattgatgctccaagaacagatgttaagccacacgctccg
aaaatggaaatgttggagatctctaaagatttcatcggtgctattatcggacctggaggt
aaaaatatccaacaattacaaaaagatacagacactgttatctctattgaagaaatcgga
gaaatcggaagagttgaaatcgcaggtactaaccgtgagaagatcaacgaagcgattgca
agaattaacgatattaccttcgttcctgttgtaggagaagtttataaaggtaaagttgtt
aaggtaatggatttcggagctttcgttcagcttaaaaaaggtactgaaggtcttcttcat
atctctgagatcgaatggaagagattggatacagttccttacaaagaaggcgatgaagta
gaagtgaaattcatgggttacgacgatcgtaagaaaatgaagctttcaagaaaagtactt
cttccaagacctccaaaaccagaaggaaaaccaaaagctgaagctgtagaagctaaaact
gaaggtgacaaacctgcagagcaagcataa
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