Elizabethkingia sp. M8: JCR23_08475
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Entry
JCR23_08475 CDS
T09429
Symbol
rlmD
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
eliz
Elizabethkingia sp. M8
Brite
KEGG Orthology (KO) [BR:
eliz00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
eliz03009
]
JCR23_08475 (rlmD)
Enzymes [BR:
eliz01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
JCR23_08475 (rlmD)
Ribosome biogenesis [BR:
eliz03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
JCR23_08475 (rlmD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
Methyltransf_31
Methyltransf_25
Cons_hypoth95
TRAM
Methyltransf_11
MTS
Methyltransf_15
TRM5-TYW2_MTfase
N6_N4_Mtase
RrnaAD
PCMT
Methyltransf_4
UPF0020
PrmA
FtsJ
Methyltransf_12
Methyltransf_2
NpmA
2-ph_phosp
Motif
Other DBs
NCBI-ProteinID:
QQM28422
UniProt:
A0A7T7HFY4
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All DBs
Position
complement(1840543..1841955)
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AA seq
470 aa
AA seq
DB search
MQKKKKNVILENIKLLSAGAKGVSVGKTEDGKTILVSGAVPGDVVNARMKKSKKNYIEAE
AVEILEESPDRVDARCMHFSVCGGCKWQNLSYEKQLQFKEDEVLNNIRRIGGIEGFEALP
ILGSAEQYFYRNKMEFSFSNARWLTLEEVNSTEEIADRNALGFHIPGQWSKILDLKECFL
QEDPSNNIRLAVKEYAEENNLEFFDVRNQEGFLRTLMMRQNSKGEWMVLFQLFEENETER
IKLLDFLLQKFPQIHTLLYAINPKGNDSIYDLDIQTYYGEGFLYEEMDGLRFKIGPKSFF
QTNYKQALELYRKTLEFADLKGDEVVYDLYTGTGTIAQYVARNAKQVIGIEAVQEAIDAA
KEHAELNGLTNCTFYCGDMKDIFNQEFLESHPKADVLITDPPRDGMHAKVVEQILNLSPE
KIVYVSCNSATQARDLAMLKEHYNLVKVLPVDMFPQTHHVENIALLIKKS
NT seq
1413 nt
NT seq
+upstream
nt +downstream
nt
atgcagaaaaaaaagaagaatgtaattcttgaaaatatcaaactcctttcagccggtgcg
aaaggagtttctgttggtaaaacagaagatggtaaaaccattttggtgagtggggctgta
cccggagatgtggtaaatgcccgtatgaaaaaatcgaaaaagaactatattgaagctgaa
gcagtagagattctggaagaatctcctgacagagttgatgccagatgtatgcatttcagc
gtgtgcggagggtgtaaatggcagaatcttagttacgaaaagcaattacagtttaaagag
gatgaagtactgaataatattcgtagaattggcggtattgagggatttgaagcgttgcct
attctgggatctgcagaacagtatttttacagaaataaaatggagttctctttttctaat
gcacgttggcttacattggaagaagtaaattctacagaagaaatagctgacagaaatgca
ttagggtttcatattccgggacaatggagcaagattctggatctgaaggagtgttttctg
caagaagacccatccaacaatattcgtcttgctgtaaaagaatatgctgaggaaaataat
ctcgaattctttgatgtaagaaaccaggaaggttttcttcgtacgctaatgatgcgtcag
aactctaaaggagaatggatggttttattccaactttttgaagagaatgaaaccgaacgt
ataaagctattggatttccttctgcaaaagtttccgcaaatacatacattactttatgca
atcaacccaaaaggaaacgacagtatctatgatctggatatccagacttactacggggaa
gggtttttgtatgaagaaatggatggacttagatttaaaataggacctaagtcatttttc
caaaccaattacaagcaggcgcttgaattatatcgtaaaactcttgaatttgcagacctg
aaaggagatgaagttgtatacgacctttatacaggaaccggaactattgcgcaatatgtt
gcccgtaatgcaaagcaggtgataggtatagaagcagtacaagaagctatagatgcagct
aaagagcatgcagaattaaatggtcttaccaattgtactttctattgtggagatatgaaa
gatatcttcaatcaggagtttttagaatctcaccctaaagcagatgttctaattactgac
ccgccaagagacggaatgcatgctaaagtagtagaacagatacttaatttatcgccagag
aaaattgtatatgtaagctgtaattctgcaacacaagccagagatttggctatgttaaaa
gaacattataacttagtgaaggttttgccggtggacatgttcccgcaaactcatcacgta
gagaatatagcactgcttattaaaaaatcatga
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