Elizabethkingia sp. M8: JCR23_14250
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Entry
JCR23_14250 CDS
T09429
Symbol
rpoN
Name
(GenBank) RNA polymerase factor sigma-54
KO
K03092
RNA polymerase sigma-54 factor
Organism
eliz
Elizabethkingia sp. M8
Pathway
eliz02020
Two-component system
eliz02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
eliz00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
JCR23_14250 (rpoN)
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
JCR23_14250 (rpoN)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
eliz03021
]
JCR23_14250 (rpoN)
Transcription machinery [BR:
eliz03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
JCR23_14250 (rpoN)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_CBD
Sigma54_DBD
Sigma54_AID
Med9
Carn_acyltransf
Motif
Other DBs
NCBI-ProteinID:
QQM26016
LinkDB
All DBs
Position
3091903..3093366
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AA seq
487 aa
AA seq
DB search
MLKQNLQIKLGQKMAPQQIQLMKLIQLHTLEFEEELQRELEENPALEKAVDEAKEDDYSD
IDSSYDDEGTESIETDFDVNEYLFDDEPSYKTAASNYSPDDEEFDNQSLLTEGQSLYDYL
IEQIRLTKIGEEDLKIAEYIIGNLDNDGYLRRDIKSLVNDMAFSLGIYTTPENVEDVLTN
YVQKLDPPGVAARDLKECLLLQIEKKVSGNPAVSLAHNILLHQFDALSNKHYNKIMHKYD
VEEDDLKDALDEISKLSPKVGGNFDTQTITINQEIIPDFVINVKDGKVTAALNSKNAPQL
RVSDEYKEILTTYSHDKTSQEHKQAALFIKQKLDAAKWYIDAINQRQNTLMQTINAIIKL
QKDYFITGDDKSIKPMILKDVADITGFDISTISRVVKSKYADTPNGIVYLKNLFSDSLTN
DDGEEVSTKEIKNHLQDIIDKENKRKPYTDDALVGMLKDKGYNIARRTIAKYREQLNIPV
ARLRKEL
NT seq
1464 nt
NT seq
+upstream
nt +downstream
nt
atgctgaaacaaaatttacagataaaacttggccagaaaatggcaccacaacaaattcag
ttgatgaagcttattcagcttcatactcttgaatttgaagaagaactacaacgtgagctg
gaagaaaatccggcgttggaaaaagctgtggacgaggccaaggaagatgattattcggat
attgatagtagttacgatgatgaaggtacagagtctatagaaactgatttcgatgtaaat
gagtatttgttcgatgatgaaccttcttataaaactgcggcaagtaactactcgccggac
gatgaagaattcgataaccagtcgttgcttacagaaggacagtccttgtacgattatctt
atagaacagatccggttgacgaagatcggcgaggaggatctgaaaatagcagaatatatt
ataggtaacctggacaatgacggttatctgagaagagatataaaatctttggttaatgat
atggctttttcattgggaatatatacaacacctgaaaatgttgaagatgtattaaccaat
tatgtacaaaaactagacccgccaggagtagcagcaagagatctgaaagaatgccttctg
ctccagattgaaaaaaaagtaagtggaaatccggcagtgtcattggcacataatattttg
cttcaccagtttgatgctttaagtaacaagcattataacaaaatcatgcacaagtatgat
gtagaagaggatgatctgaaagatgcactggatgaaatctctaaattatctcctaaagta
gggggtaatttcgatacgcagaccattacaatcaatcaggaaattattccggatttcgtt
atcaatgtaaaggacggaaaagtcacagcagcacttaatagtaagaatgctccgcagcta
cgtgtttcagatgagtataaagaaattttaacaacttactcacacgataaaacatcccag
gaacataagcaggcagcgttgtttatcaaacaaaaattggatgctgcaaaatggtatata
gatgctattaatcagcgtcagaatacattgatgcagaccattaatgctattataaagctg
cagaaagattactttattaccggagacgacaaaagtataaaaccgatgattctgaaagat
gtagcagatattacaggttttgatatatctacaatttcccgtgtggtaaaaagtaaatat
gcagatacacctaacggcattgtttatctgaagaatcttttctcagatagtcttacaaat
gatgacggtgaagaggtttcaaccaaagagattaaaaatcacctgcaggatattatagac
aaggagaataaaagaaaaccttataccgatgatgcgttagtaggaatgctgaaagataaa
ggatacaatattgcccgacgtaccattgctaaatacagggagcaactgaatattccggta
gcaagattaagaaaagaattataa
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