Enhydra lutris kenyoni (northern sea otter): 111140645
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Entry
111140645 CDS
T05871
Name
(RefSeq) spatacsin isoform X1
KO
K19026
spatacsin
Organism
elk
Enhydra lutris kenyoni (northern sea otter)
Pathway
elk05014
Amyotrophic lateral sclerosis
elk05022
Pathways of neurodegeneration - multiple diseases
Brite
KEGG Orthology (KO) [BR:
elk00001
]
09160 Human Diseases
09164 Neurodegenerative disease
05014 Amyotrophic lateral sclerosis
111140645
05022 Pathways of neurodegeneration - multiple diseases
111140645
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
elk03400
]
111140645
DNA repair and recombination proteins [BR:
elk03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Other HR factors
111140645
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Spatacsin_C
Motif
Other DBs
NCBI-GeneID:
111140645
NCBI-ProteinID:
XP_022348552
UniProt:
A0A2Y9IIR4
LinkDB
All DBs
Position
Unknown
AA seq
2444 aa
AA seq
DB search
MAAEKAAGGAAACGTCSAKAMERVLPMLLVPVPVEATGRLGCRAQLHREQEVLGSLTAAG
SLQVLSLAPGGRSGGACCLNGPFRHFVWEDSRNSSSPTDKPKLLALSESYELLIYEFDLK
DGRCDATILYSCSEETLQKLIEDQNINISLLSLRILSFHNNTSLLFINKCIVLHIVFPER
DAEIGVLNCFTLPLPTQAVDRITDVQLCRGILFILSSLDWIYIFDTVDGTHVAHVDLALH
QEDVCNEQQQEPAKISSFTSLKVSQDLDVVVIVSSSNSAIAVNLNLYFRQHPGHLLCERT
LEDIPIEGPKGIDEDDPVNSDYNMKLTKFSFQVDRSWKAQLSSLNETIKSSKLEVSHCAP
WFQNILHLESPESGNHSTSMLGWAFIPQDIRHSHCKFPQKDHANTSDPGRSWKIMNVSEQ
EEPVELTCMSVTGFSVLFTWAVEGMGCTIGLWDLETQGMQCFSLGRKCIPIDASGDEQLC
LVLTENGLSLILFGLTQEEFLNRLMIHGSASTVDSLCHLNGWGRCSIPIHALEAGIENRQ
LDTVDFFLKSKENLLNPSSKSSVPGQLDDFPSYLYLRNVEKLIPALDLLCSAIRESDSET
QSKHFSEQLLNLTLSFLNKQIKELFVHSEELDEHLQKGVNILTSYINELRTFMIKFPWKI
IDTVDEYDVNENVPKVRESSMWEKLSIEEVIASAVLDNKIPEAQTFFRINNHSAQRLEEL
IRIGLNLVFDNLKRNNIKEASELLKNMGFDVKDQLLKICFYTTDTNIRDFLVEILKEKNH
FSENEKRTIDFVHQVEKFYSGQFQENVQIQSFARYWIKEQDFFKHKSVLDSLLKYDPKDK
FNKQDHRVVLNWARWWNQLTQESILLPRISPEEYKSYSPEALWSYLTARHDWSSIILWIG
EFQTQNSCALLEKNRWPLLTVDVIDQHTCCSSYMRNEILDQLARNGIFLESELEDFELLL
LRLTRIGGVMQDAVPVPNYRAQEGWDFHSHFILYCLEHGLQYLLYVYLDCYKLSPSNCPF
LEKKELHEAYPWFEFLVQCRQVSSNLTDPKLIFHASLANAQILIPSNQASISSMLLEGHT
LLALATTMYAPGGVSQVVQNDENETCLKKVDPQLLKMALTPYPKLKTALFPQYITSNVLP
PDITLYHLIQSLLPFDPSRLFGWQYANTLAIGDAVSHLPHFSSPDLVNKYAIVERLNFAY
YLQHGRPSFAFGTFLVQELTKSKTPKQLIQQVGNEAYVLGLSSFYVPSVGAACVCFLELL
GLDSLKLRVDMKVANIILSCKCRNEDARSSYIRESLAEKLSKLAVGEKGTIEELLTLLEE
GIWNSIQQQEIKRLSSESSSQWALAVQFCRLHDVKLSTSYLRECAKANDWLQFIIHSQLH
NYHPEEVKSLLQYFSPVLQDHLRLAFENLTSVSNSKMDSDPVCNRVPQELQRNKEEITDL
FEVLLQCSEEPDSWCWLLAEAVKQRAPILSVLASCLQDASTIPCLCVWIVTSVEDTVAAE
AREHIQGSMEEHIWDLQDLSVIWRTLLTRQKSKTLIRGFQLFFKDSPLLLMMEMYELCMF
FKNYKEAEAKLLEFQKSFETVETAATRVHATIPAPWLKEHVCFLLKLMLQQCGTQYELGK
LLQLFVGIENLFFDGPDVKKLCVLSQILKDTSIAINHVIISSYSLENFQHECKSILEKLE
TEGRFALARRVAELAELPVDNLVIEEITQEMQTLQHTDQWDLKQARIDFWTKCHENFKKN
AISSRAAASFFSAQAQVAPEAPGEEGPPGLEERRLLLTLAAHWLAQEAPGPEDELEELEK
QIWRCRIAQHALREKQEDPEPRFPQHISTSGEPSFDSVAHKFSFSMLAALNTAKYLELSG
LPRKETCESRLDWKEQESLNSLIGRLLDDGCVHEASRVCRYFHFYNQDVTLVLHCRALAA
GEASMDGLHPEIHAVLQSTQRLEEEEPGTPLRKVQSTSSLDSQSFVMLPPSDEVVTNLET
LTSKCLHGKNYCRQVLCLYELAKELGCSYTDVAAQDGEAMLRAILASRQPDRCRRAQAFI
STQGLEPDTVAELVAEEVTRELLTPSEGTGQKQMFAPAEESQTFLQLTTLCQDRTLVGMK
LLDKISSVPHGELSCTAELLILAHHCFTLTCHMEGIIRVLQAARLLTDKHLAPSEEYGLM
VRLLTGIGRYNEMTYIFDLLHKKHYFEVLMRKKLDPSGTLKTALLDYIKRCRPGDSEKHN
MIALCFSMCREIGENHEAAACIQLKLIESQPWEDSLKDGQHLKLLLLKALTLMLDAAESY
AKDSCVRQALHCHRLTKLITLQIHFLNTGQNTMLINLGRHRLMDCLMALPRFYQASIVAE
AYDFVPDWAEILYQRVILKGEFNYLEEFKQQRLLRSSIFEEISKKYKQHQVADTAVKNLK
KLLTYCEDVYLYYRLAYEHKFFDIVNVLLKDPQTGCCLKDMLAG
NT seq
7335 nt
NT seq
+upstream
nt +downstream
nt
atggctgcagaaaaggctgcggggggagctgctgcttgcggcacctgcagcgcgaaagcc
atggagcgggttctacctatgctgttggtgccagtccctgtggaggcaacagggcggctg
ggatgccgggcgcagttgcacagagagcaggaggttctggggagcctaacagctgcaggc
agcctgcaagtgctttccttggcgccgggcggccggagcgggggtgcctgctgccttaat
ggcccctttcggcactttgtatgggaagattctcgtaacagcagctcaccaacagacaaa
cccaaactgcttgctcttagtgaaagttatgaactgttaatctatgaatttgatttgaaa
gacggaagatgtgatgcaaccattttgtatagctgtagtgaggagaccttgcaaaagctc
attgaagatcaaaatatcaatatttctttattatctttgagaatcctgtcatttcacaat
aacacatcactattgttcatcaacaagtgtattgtcctacacattgtatttcctgaaaga
gatgctgagattggagtactcaactgtttcacgttacccttgcctacacaagcagtggac
aggattactgacgtacagctctgcagaggaattctttttattttgagtagtttagattgg
atttacatttttgacactgtggatggtacacacgtagcccatgtggatttagcacttcac
caagaagatgtgtgtaatgagcaacagcaggaaccagccaagatttcttccttcacttca
ctgaaagtgtctcaagacctagatgttgtagtgattgtcagctcctccaactctgcaatt
gctgttaacttaaatttgtatttcaggcaacacccaggacacctactatgtgaaagaact
ctagaagacattcctattgaaggccccaaggggatagatgaagatgatcctgttaattct
gactacaacatgaaactgaccaagttttcctttcaagttgataggtcttggaaagcccag
ctgtcatcactgaatgaaacaataaagagctccaaactggaggtttcccattgtgctcca
tggttccagaatattttgcatttggagtcccctgaatctggtaaccacagtaccagtatg
ctaggctgggccttcattccacaggacataaggcacagccactgtaagtttccacagaag
gatcatgccaacaccagtgacccagggagatcatggaaaatcatgaacgttagtgaacaa
gaggaacctgttgagcttacttgtatgtctgtgacaggattcagtgtactgttcacttgg
gcagtggaaggaatgggctgcaccattggcctttgggatttggagacccagggtatgcag
tgtttctcccttggcagaaagtgtattcctatagacgctagtggagacgagcagctgtgc
cttgtcttgacagaaaatggactctctctgattttgtttggattgactcaagaggagttt
ttaaatagactaatgatccatggaagtgccagcactgtggactctctttgccatctcaat
ggttggggaaggtgctcaatccccatacatgccctggaggctggaatagaaaatcgtcaa
ctggacacagtagatttctttttgaagagcaaagaaaatcttttgaatccatcctcaaaa
tcttctgtacctggtcagcttgatgacttcccatcttatttgtatttaagaaatgtggaa
aagctgataccagcattggatttactttgctcagcaattagagaaagtgattctgaaacc
caaagcaaacacttttcagaacagttgcttaatcttacactgtcttttcttaacaaacaa
ataaaggagctttttgttcacagtgaagaactagatgaacatctacaaaaaggagtgaac
attttgaccagctacattaatgaacttcgaaccttcatgataaagtttccttggaagata
atagatacagtagatgaatatgatgtcaatgaaaatgttcccaaagtaagagagagcagt
atgtgggagaaactcagcattgaggaagttattgccagtgctgttttagacaacaaaata
ccagaggcacagactttcttcaggattaacaatcattctgctcaaagacttgaggagctg
attagaataggcctaaatttggtctttgacaatttgaaaaggaacaatataaaggaagcc
tctgaacttttgaagaacatgggctttgatgtaaaagaccagttgctcaagatatgcttc
tatacaactgatacaaatatacgggactttctggttgaaattttaaaagaaaaaaatcat
ttttctgaaaatgaaaaaagaactatagacttcgtgcatcaagttgagaagttttattca
ggacaattccaagaaaatgtgcagatccagtcctttgccaggtattggataaaggaacag
gattttttcaagcataaatctgttttggactcactcctgaaatatgatcctaaagataaa
tttaacaaacaggaccatagagttgtgttaaattgggctcggtggtggaatcaactaacc
caagaatccatccttctccccaggataagtccagaagaatacaaatcatattctcccgaa
gccctctggagctatctcacagctcgccatgactggtcaagcattatcttgtggattgga
gaatttcagactcagaacagttgtgctttgcttgagaaaaacagatggccccttctgact
gttgatgttatcgatcagcatacttgctgcagcagctacatgaggaatgaaattttagat
cagctggccaggaatgggatttttcttgaatctgaattagaagactttgaactcttgctg
ctaagactgacccgcattgggggtgtgatgcaagatgctgtccccgttccgaactacaga
gcccaagaaggctgggatttccattctcacttcattctctattgtttggaacacggtctg
cagtatcttctctatgtgtatctggactgttacaaacttagtccttcaaattgtcccttt
ttggaaaaaaaagaattacatgaagcttacccttggtttgaatttttagttcagtgtcga
caagtctccagtaatttaacagatcccaaactgatcttccatgctagccttgcaaatgct
caaatactgattcccagcaaccaggccagtataagcagtatgctattggaaggacatact
ctcctggcccttgctaccacaatgtatgcccctgggggtgtcagccaggttgttcagaat
gatgaaaatgagacctgtttgaagaaagtagatccccagttactgaagatggcattaact
ccttaccccaagctaaaaactgctctcttcccacagtacatcacctctaatgttctgcca
cctgatattacactttaccaccttattcagtcacttttgccctttgaccctagcagattg
tttggctggcagtatgccaacacgctggctataggagatgcagtgagtcatctcccacat
ttttctagccctgacctggttaataaatatgctatagtggaacgtctgaattttgcatat
tatttacaacacggacgaccatcatttgcatttggtacttttctggtccaggaattaacc
aagagcaagactcccaagcagctgatccagcaagtaggtaatgaagcctatgttttaggg
ctctcctccttctacgtaccttcagtaggagctgcctgtgtttgtttcttagaactgctt
ggcctcgacagtctcaagctcagagttgatatgaaagtggccaatataattctgagctgc
aagtgtagaaacgaagatgctcggtccagctatatcagagagtctctagctgaaaaacta
tctaaactggctgtgggtgaaaagggcaccatagaggaattgcttactctcttagaagaa
ggtatatggaacagcatccagcagcaggaaataaagaggttatctagtgaatctagcagc
cagtgggcattagcagtacagttctgcaggcttcacgatgtgaaactgagcacatcttac
ctcagagaatgtgccaaagcaaatgactggttacagttcattatccatagccagctccat
aactatcacccagaggaggtgaaatctctccttcagtattttagtcctgtccttcaagac
catttaagactggcttttgagaacttgacctcagtgtctaactccaaaatggacagtgat
ccagtctgcaacagggtcccccaagaactccagagaaacaaggaagagattactgattta
tttgaagttctgctccagtgctcagaggaaccagactcctggtgctggctccttgctgaa
gcagtgaaacaacgggcccctatccttagtgtcctggcctcctgtctccaggatgccagt
actattccttgtctctgtgtttggatcgtcacatctgtggaggacactgttgctgctgaa
gcaagagaacacattcagggctcaatggaagagcacatatgggaccttcaagacctctca
gtcatctggagaacattactaacaaggcagaagagcaaaactctcatcagaggtttccaa
cttttctttaaggattccccactactgttgatgatggagatgtatgaactgtgtatgttt
ttcaagaattataaggaagccgaagctaaacttctggagttccaaaagagctttgaaact
gttgaaacagcagccacaagggtccacgctaccatccctgccccatggctgaaggagcac
gtgtgttttcttctgaagcttatgctgcagcagtgtgggacccagtatgaactggggaag
ttgttacagctctttgttggaatagaaaatctcttctttgatggtccagatgtgaagaag
ctctgtgtccttagccaaattttaaaggacacatccatagccattaatcatgtaattatt
agcagctacagccttgagaatttccagcacgaatgtaaatctattttggaaaaactggag
acagagggacggtttgctttggccagaagagtagcagaattagcagaactacctgtggac
aacttggttattgaagagataacacaggaaatgcaaaccttacagcacaccgaccagtgg
gacctgaaacaagcaagaattgacttctggacaaagtgtcatgagaattttaagaaaaat
gccatttcaagcagagcagctgcttcctttttctcagctcaggcccaggtggcccctgag
gccccaggggaggagggaccgcccggcctggaggagcgccgtctgctgctcacactggcg
gctcactggcttgctcaggaggctccagggcctgaggatgagctggaggagctggagaag
cagatctggcgctgccgcattgcccagcatgccctcagagagaaacaggaggacccagag
cccaggtttcctcagcacatctcaactagtggggagccgtcctttgatagtgtagcccac
aagttttcattctccatgttggctgctctgaacacagcaaaatatttagaacttagtggc
cttccacgcaaagagacttgtgagagcagactggattggaaggagcaggagtcccttaac
tctctgattgggcgcctactggatgatggctgtgtccatgaagcaagtagagtgtgtcgg
tattttcatttctacaaccaagatgtcaccttggtgttgcactgcagagcactggctgca
ggggaagctagtatggacggcctgcacccagagatccatgctgtcctacaaagcacccag
cggcttgaggaagaagaacctggcactccactaagaaaagtccaaagcacttcgagtttg
gatagtcagtcatttgtgatgctgccccccagtgatgaagtggtgactaatctggaaact
ctgacaagcaaatgcctccatgggaagaactactgccggcaggtcctgtgtctgtatgaa
cttgccaaggagttgggctgttcctacacagacgtggctgctcaggatggtgaggccatg
ctccgggcaatcttggcctctcggcagccggaccgatgcaggcgcgcccaggctttcatc
agcacccagggcctcgagccagataccgtggctgaacttgtggctgaagaggtgacccgg
gagctactgaccccatcagagggaacaggacagaagcagatgttcgctccagcagaggaa
agccagacgtttcttcagctgaccactctgtgtcaagatcgcacgttggtaggcatgaag
ttgttggacaagatttcctccgttccccacggggaactgtcttgcactgcggagctgctg
atcctggcccatcactgcttcacgctcacatgccacatggaggggatcatccgggtcctg
caagctgcccggctgctcacggacaaacacttggcccccagtgaggagtacgggctgatg
gtgcgcctcctcactggcatcggaaggtacaacgagatgacctacatatttgaccttttg
cataaaaagcactacttcgaagtactgatgaggaagaagttggatccgagtggcaccctg
aagacggccctcctggactacatcaaacgttgccgccctggggacagtgagaagcacaac
atgattgctctgtgcttcagcatgtgtcgggagatcggggagaaccacgaggcggctgcc
tgcatccaactgaaattgatcgagtcccagccctgggaggacagcctcaaggacgggcag
cacctgaagctgctgctgctgaaagccctgaccctgatgctggacgcggcggagagttac
gccaaggactcctgtgtgcgacaggccctgcactgtcaccggctcactaagttgataaca
ctgcagattcactttctgaacacgggccagaacacgatgctcatcaacctgggccgccac
cggctgatggactgtctcatggctctacctcggttctaccaggcttctattgtggccgag
gcctatgactttgttcccgattgggcagaaatcctctaccaacgagtgattcttaaagga
gaatttaattacctggaagaatttaagcagcaaagattattaagatctagtatatttgaa
gagatttccaaaaaatacaaacaacatcaagtggctgacacagctgtgaaaaacctgaag
aagttactcacatactgtgaagatgtctacctatattacaggctcgcatacgaacacaaa
ttttttgacattgtaaatgtgctgctgaaggaccctcagactggctgctgtctgaaggac
atgctagcaggttag
DBGET
integrated database retrieval system
