Enhydra lutris kenyoni (northern sea otter): 111152842
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Entry
111152842 CDS
T05871
Name
(RefSeq) pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16 isoform X1
KO
K12815
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX38/PRP16 [EC:
5.6.2.6
]
Organism
elk
Enhydra lutris kenyoni (northern sea otter)
Pathway
elk03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
elk00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
111152842
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
elk03041
]
111152842
Enzymes [BR:
elk01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
111152842
Spliceosome [BR:
elk03041
]
Complex C
Other components
Step II factors
111152842
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
Helicase_C
HA2_C
DEAD
HA2_N
AAA_22
AAA_19
T2SSE
nSTAND3
PhoH
AAA_30
Flavi_DEAD
Microtub_bd
AAA_16
AAA_7
Motif
Other DBs
NCBI-GeneID:
111152842
NCBI-ProteinID:
XP_022367223
UniProt:
A0A2Y9K1P3
LinkDB
All DBs
Position
Unknown
AA seq
1227 aa
AA seq
DB search
MEDTSEDASIHRLEGTDMDSQVGGLICKTKSAASEQHVFKAPAPRPSLLGLDLLASLKRR
EREEKDDGEDKKKSRISSYKDWEESKDDQRDAEEEGSDQAGRHSRKDRHYRSARVETPSH
PGGVSEEFWERSRQRERERREHGVYASSKEEKDRKKERSRDRDCDRKRDRADERDRSRHS
SRSERDGGSERSRRNEPESPRHRPKDAATPSRSAWEEEDSGYGFSRRSQWESPSPAPSYR
DSERSHRQSSRDRDRSVRSRYSDDTPLPTPSYKYNEWADDRRHLGSTPRLSRGRGRREDG
EEGISFDTEEERQQWEDDQRQADRDWYMMDEGYDEFHNPLAYSSEDYVRRREQHLHKQKQ
KRISAQRRQINEDNERWETNRMLTSGVVHRLEVDEDFEEDSAAKVHLMVHNLVPPFLDGR
IVFTKQPEPVIPVKDATSDLAIIARKGSQTVRKHREQKERKKAQHKHWELAGTKLGDIMG
VKKEEEPDKALTEDGKVDYRTEQKFADHMKKKSEASSEFAKKKSILEQRQYLPIFAVQQE
LLTIIRDNSIVIVVGETGSGKTTQLTQYLHEDGYTDYGMIGCTQPRRVAAMSVAKRVSEE
MGGSLGEEVGYAIRFEDCTSENTLIKYMTDGILLRESLREADLDHYSAIIMDEAHERSLN
TDVLFGLLREVVARRSDLKLIVTSATMDAEKFAAFFGNVPIFHIPGRTFPVDILFSKTPQ
EDYVEAAVKQSLQVHLSGAPGDILIFMPGQEDIEVTSDQIVEHLEELENAPALAVLPIYS
QLPSDLQAKIFQKAPDGVRKCIVATNIAETSLTVDGIMFVIDSGYCKLKVFNPRIGMDAL
QIYPISQANANQRSGRAGRTGPGQCFRLYTQSAYKNELLTTTVPEIQRTNLANVVLLLKS
LGVQDLLQFHFMDPPPEDNMLNSMYQLWILGALDNTGGLTSTGRLMVEFPLDPALSKMLI
VSCDMGCSSEILLIVSMLSVPAIFYRPKGREEESDQIREKFAVPESDHLTYLNVYLQWKN
NNYSTIWCNDHFIHAKAMRKVREVRAQLKDIMVQQRMSLASCGTDWDIVRKCICAAYFHQ
AAKLKGIGEYVNIRTGMPCHLHPTSSLFGMGYTPDYIVYHELVMTTKEYMQCVTAVDGEW
LAELGPMFYSVKQAGKSRQENRRRAKEEASAMEEEMALAEEQLRARRQEQEKRSPLGSVR
STKIYTPGRKEQGEPMTPRRTPARFGL
NT seq
3684 nt
NT seq
+upstream
nt +downstream
nt
atggaggataccagcgaggatgcctcaattcatcgattggaaggaactgatatggactct
caggttggcggtcttatttgtaagaccaaaagtgcagccagtgagcagcatgttttcaag
gcccccgccccccgcccttcattgctgggactggacttgttagcttccctgaaacgaagg
gagcgagaggagaaggatgatggggaggacaagaagaagtccagaatctcttcctacaag
gactgggaggagagcaaggatgaccagagggatgctgaggaggagggcagtgaccaagct
ggccgacacagccgaaaagacagacattatcggtctgctcgggtagagactccatcccat
cctggtggtgtgagtgaagagttttgggaacgcagtcggcagagagagcgggagcggcgg
gagcatggtgtctatgcctcgtccaaagaagaaaaggatcggaagaaagagagatcacgg
gatcgagactgtgaccgcaagagagacagagcagatgagcgggatagaagcagacacagc
agcagatccgagcgagatggagggtcagagcgcagcagaagaaatgaaccggagagcccg
agacaccgaccaaaagacgcagctactccttcaaggtctgcctgggaggaagaggacagt
ggctatggcttctcaaggcgctcgcagtgggaatccccgtctccagcaccttcttaccgg
gattctgagcggagccatcgacagtctagtcgtgatcgggataggtccgtgcggagcagg
tattcagacgacacacctctgccgaccccatcctacaaatacaacgagtgggccgatgac
agaagacacctgggctccacgccccgtctgtccaggggccgagggagacgtgaggatggt
gaagagggaatttcgttcgacacagaagaggaacggcagcagtgggaggatgaccagagg
caagcggaccgggattggtacatgatggatgagggatacgacgagttccacaaccccctg
gcctactcctccgaggattacgtgagaaggcgggagcagcacctgcataaacagaagcag
aagcgcatttcggctcagcggaggcagatcaatgaggataacgagcgctgggagaccaac
cgcatgctcaccagcggggtggtccatcggctggaggtggacgaggacttcgaggaggac
agtgcggccaaagtgcatttgatggtgcacaacctggttcctccctttcttgatgggcgc
atcgtcttcaccaagcagccagagccggtgattccagtcaaggatgccacttccgacttg
gccatcattgctcgaaaaggcagtcagacagtgcggaagcacagggaacagaaggaacgg
aaaaaggctcaacacaaacactgggagctggctggaaccaagctaggagacatcatgggt
gtcaaaaaagaggaagagccagataaagctctgacagaagacggtaaagtggactatagg
acagagcagaagtttgcagatcacatgaagaaaaagagcgaagccagcagcgagtttgcc
aagaagaagtccattctggagcagcgacagtatctgcccatctttgctgtgcagcaggaa
cttctgactatcatcagagataacagcatcgtgatcgtggttggagagacagggagtggt
aagaccactcagctgacgcagtacttgcatgaagacggttacacagactacgggatgatc
gggtgcacccagcctcgccgtgtggctgccatgtctgtggccaagagagtcagtgaagaa
atggggggaagccttggtgaggaggtgggttacgcgatccgcttcgaagactgcacgtca
gaaaacaccttgatcaaatacatgacggacgggatcctgctccgggagtcgctccgggaa
gcggacctggatcactacagtgccatcatcatggacgaggcccacgagcgctccctcaac
actgatgtgctctttgggctgctccgggaggtggtggctcggcgctcagacctgaagctc
atcgtcacgtcagccactatggatgcagagaaatttgctgccttttttgggaatgttccc
atcttccacatccctggccgtactttccctgttgacattctcttcagcaagaccccgcag
gaggactatgtggaggccgcagtgaagcagtccttacaggtgcacctgtcaggggcccct
ggggacatccttatcttcatgcctggccaagaggacattgaggtgacctcagaccagatt
gtggaacatctggaggaactggaaaatgcacctgccttggctgtgctgcccatctactcc
cagctaccgtccgacctccaggctaaaatcttccagaaggctccagatggagttcggaag
tgtatcgttgccaccaacattgctgagacgtctttgactgtcgatggcatcatgtttgtt
attgactctggttattgcaaattaaaggtcttcaaccccaggattggcatggatgctcta
cagatctaccccatcagccaggccaatgccaaccagaggtcggggcgcgctggccggacg
ggcccaggtcagtgtttcaggctctacacccagagcgcctacaagaacgagctgctgacc
accacggtgcctgagatccagaggaccaacctggccaacgtggtgctgctgctcaagtcc
ctcggtgtgcaggacctgctgcagttccacttcatggacccgccgcctgaggacaacatg
ctcaactccatgtatcagctctggatcctcggggccctggacaacaccggtggtctgacc
tcgacgggtcggctcatggtggagttccccctggacccggcgctgtccaagatgctgatt
gtgtcctgtgacatgggctgcagctcggagatcctgctcatcgtgtccatgctctccgtg
ccggccatcttctacaggcccaagggccgagaggaggagagcgatcagatccgggagaag
tttgctgtccccgagagtgatcatttgacctacctgaatgtctacctgcagtggaagaat
aataattactccaccatctggtgtaacgatcattttatccatgccaaggccatgcggaag
gtccgggaggtacgggctcagctcaaggacatcatggtgcagcagcggatgagcctggcc
tcgtgtggcactgactgggacatcgtcaggaagtgtatctgtgcagcctatttccaccag
gcggctaagctcaagggaattggggagtatgtgaatatccggacagggatgccctgccac
ctgcaccccaccagctctctctttggaatgggctataccccagactacatagtatatcac
gagctggtcatgaccaccaaggagtacatgcagtgtgtgactgccgtggatggagagtgg
ctggcggagctgggccccatgttctacagtgtgaaacaggcgggaaagtctcggcaggag
aaccgccgacgggccaaagaggaggcctctgccatggaggaggagatggccctggcagag
gagcagctgcgagcccggcggcaagagcaggagaagcgcagccccctgggcagtgtccgg
tctacaaagatctacactccaggtcggaaggagcaaggcgaacccatgacccctcgccgc
acaccagcccgctttgggctctga
DBGET
integrated database retrieval system
