Enhydra lutris kenyoni (northern sea otter): 111156119
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Entry
111156119 CDS
T05871
Name
(RefSeq) poly(A)-specific ribonuclease PARN isoform X1
KO
K01148
poly(A)-specific ribonuclease [EC:
3.1.13.4
]
Organism
elk
Enhydra lutris kenyoni (northern sea otter)
Pathway
elk03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
elk00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
111156119
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
elk03019
]
111156119
Enzymes [BR:
elk01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
111156119
Messenger RNA biogenesis [BR:
elk03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
111156119
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CAF1
RNA_bind
R3H
RRM_Thc1
T6PP_C
RRM_1
NCBP3
Motif
Other DBs
NCBI-GeneID:
111156119
NCBI-ProteinID:
XP_022372458
UniProt:
A0A2Y9KH53
LinkDB
All DBs
Position
Unknown
AA seq
638 aa
AA seq
DB search
MEIIRSNFKSNLHKVYQAIEEADFFAIDGEFSGISDGPSVTALTNGFDTPEERYQKLKKH
SMDFLLFQFGLCTFKYDHTDSKYITKSFNFYVFPKPFNRSSPDVKFVCQSSSIDFLASQG
FDFNKVFRNGIPYLNQEEERQLREQYDEKRLQSNGAGALSYVSPNTSKCPVTIPEDQKKF
IDQVVEKIEDLLQSEENKNLNLEPCTGFQRKLIYQTLSWKYPKGIHVDTLETEKKERYIV
ISKVDEEERKRREQQKLAKEQEELNDAVGFSRVIHAIANSGKLVIGHNMLLDVMHTVHQF
YCPLPADLNEFKEMTTCVFPRLLDTKLMASTQPFKDIINNTSLAELEKRLKETPFNPPKV
ESAEGFPSYDTATEQLHEAGYDAYITGLCFISMANYLGSFLSPPKIHVSARSKLIEPFFN
KLFLMRVMDIPYLNLEGPDLQPKRDHVLHVTFPKEWKTSDLYQLFSAFGNIQISWIDDTS
AFVSLSQPEQVQIAVNTSKYAESYRIQTYAEYVGKKHEEKQIKRKWTEDTWQEVERKRLK
TQSISYALQNHYYHTNSLTATGTVEKRSLSPSPAEADLEARVSGEISDAELDQAESCAEP
VSEGRKKAKKLKRMKKDLSPAGNIPNSPAKLFEVPDTW
NT seq
1917 nt
NT seq
+upstream
nt +downstream
nt
atggagataatcaggagcaattttaagagtaatcttcacaaagtgtaccaggccatagag
gaggccgacttcttcgccatcgatggggagttttcaggaatcagtgatggaccttcggta
actgcattgacaaatggttttgacactccagaagaaaggtatcagaagcttaaaaagcat
tccatggactttttgctgtttcagtttggcctttgcacgtttaagtatgaccacacagat
tcaaagtatataacaaagtcattcaacttctacgtgttcccaaaacccttcaatagatcc
tcgccagatgtcaagtttgtttgtcagagttcaagcattgactttctagcaagccaagga
tttgattttaataaagttttccgcaatggaattccgtatttaaatcaggaagaagaaagg
cagttaagagagcagtatgatgaaaaacgtctgcagtccaatggcgcaggagcgctgtct
tatgtatctccaaacacttccaaatgtcctgtgacaattcctgaggaccagaagaagttc
atcgaccaagtggtagagaaaatagaagatttactacaaagtgaagaaaacaagaacttg
aatttagagccatgtactgggttccaaagaaaactgatttatcagactttgagctggaag
tatcccaaaggcatccacgttgacactttagaaactgaaaagaaagagcgctacatcgtc
atcagcaaagtagatgaagaagagcgtaagaggagggagcagcagaaactcgctaaggaa
caggaagaactgaatgatgctgtgggattttctagagtcatccacgccattgccaattcg
ggaaagctcgttattggacacaacatgctcttggatgtcatgcacacggttcatcagttc
tattgccctctgcctgcggacctaaatgagtttaaagagatgacaacatgtgttttcccc
agactcttggatacaaaattgatggccagcacacaaccttttaaggatatcattaacaac
acatctctcgcagaattagaaaagcggttaaaagagacgcctttcaaccctcctaaagtt
gaaagtgcggaaggttttccaagttacgacacagctacggagcagctccacgaggccggc
tatgatgcttatatcacagggctgtgcttcatctccatggcgaactacctaggttctttt
cttagccctccaaaaattcatgtgtctgccagatcaaaactcattgaacctttttttaac
aagttatttcttatgagagtcatggatatcccctatctaaacttggaaggcccagatttg
caaccgaaacgggatcatgttctccatgtgaccttccccaaagagtggaaaaccagcgac
ctttatcagcttttcagtgcctttggtaacattcagatatcctggatcgatgacacatca
gcctttgtttctctcagccagcccgaacaagtacagattgctgtcaataccagcaaatat
gcagaaagctatcggatccagacctatgctgaatatgtagggaaaaaacacgaggagaag
cagatcaagaggaagtggacagaagatacctggcaggaggttgagagaaaacgattaaag
actcagtccatatcctacgctctgcagaatcactactaccacaccaacagtcttacagcc
accggcacagtagaaaagagaagtctgagtcccagcccagcagaagctgacttggaggcc
agagtatcaggggagatttctgacgctgagctcgaccaggcagagtcctgtgcagaaccc
gtctccgagggaaggaaaaaggccaagaaattaaaaagaatgaagaaggacctttcacca
gcaggaaacatccccaacagccctgccaagctcttcgaagtccccgacacgtggtaa
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